1 HisKA#1
497-561 aa · 65 aa · 8.9% of protein
Raw token
HisKA:497:0.00000000000000656:561:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWV82_RS02750
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_003464875
ClassHKTypeClassicLength728 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003464875#DWV82_RS02750Stable P2CS identifier used across views.
GenomeGCF_003464875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length728 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 728 aa (21.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa728 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
614-703 aa · 90 aa · 12.4% of protein
Raw token
HATPase_c:614:0.0000000000053:703:94:109- Raw architecture: HisKA:497:0.00000000000000656:561:65:64#HATPase_c:614:0.0000000000053:703:94:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003464875::NZ_QSAA01000004.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8198-11054Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWV82_02750RefSeq proteinWP_117993649.1
Context group ID
GCF_003464875::NZ_QSAA01000004.1::G00033Context members
DWV82_RS02745DWV82_RS02750
Partner locus tags
DWV82_RS02745DWV82_RS02750
Partner old locus tags
DWV82_02745DWV82_02750
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117993649.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWV82_RS02750Primary locus identifier stored in the genes table.
Old locus tagDWV82_02750Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSAA01000004.1Sequence record reported by the local genomic context database.
Genomic interval8 868-11 054 nt2 187 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 198-11 054 ntGCF_003464875::NZ_QSAA01000004.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003464875::NZ_QSAA01000004.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSAA01000004.1All displayed genes belong to this local TCS context.
Neighborhood span8 198-11 054 nt2 857 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 198 nt11 054 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWV82_RS02745GCF_003464875#DWV82_RS02745
RROmpR
8 198-8 896 nt · Forward (+)
DWV82_RS02750GCF_003464875#DWV82_RS02750
HKClassicCurrent focus
8 868-11 054 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003464875#DWV82_RS02750The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0717227
Simplified PFAM architecture for HKOC_0717227
PFAM domain coverage: 161 / 728 aa (22.1%)
1 aa728 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[497-561] | HATPase_c[609-704]
- Domain count: 2
- Matched identifier: HKOC_0717227
- Positioned domains: HisKA 497-561 ; HATPase_c 609-704
Cluster members and taxonomy
Representative gene: GCF_003464875#DWV82_RS02750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003464875
AssemblyASM346487v1 · Scaffoldhaploid
Genome composition3 404 406 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 94 · HK 46 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key