1 HAMP#1
57-127 aa · 71 aa · 19.9% of protein
Raw token
HAMP:57:2.66e-18:127:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWW11_RS04990
Histidine kinase, Classic
Bifidobacterium longum · GCF_003464575
ClassHKTypeClassicLength357 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003464575#DWW11_RS04990Stable P2CS identifier used across views.
GenomeGCF_003464575Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length357 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 357 aa (69.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa357 aa
Domain-by-domain annotation3 items
2 HisKA#2
131-195 aa · 65 aa · 18.2% of protein
Raw token
HisKA:131:0.00000000000000194:195:65:643 HATPase_c#3
240-350 aa · 111 aa · 31.1% of protein
Raw token
HATPase_c:240:1.08e-21:350:112:109- Raw architecture: HAMP:57:2.66e-18:127:71:69#HisKA:131:0.00000000000000194:195:65:64#HATPase_c:240:1.08e-21:350:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003464575::NZ_QRZE01000003.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span104267-106062Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWW11_04990RefSeq proteinWP_181989786.1
Context group ID
GCF_003464575::NZ_QRZE01000003.1::G00008Context members
DWW11_RS04985DWW11_RS04990
Partner locus tags
DWW11_RS04985DWW11_RS04990
Partner old locus tags
DWW11_04985DWW11_04990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_181989786.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWW11_RS04990Primary locus identifier stored in the genes table.
Old locus tagDWW11_04990Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRZE01000003.1Sequence record reported by the local genomic context database.
Genomic interval104 989-106 062 nt1 074 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span104 267-106 062 ntGCF_003464575::NZ_QRZE01000003.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003464575::NZ_QRZE01000003.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRZE01000003.1All displayed genes belong to this local TCS context.
Neighborhood span104 267-106 062 nt1 796 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
104 267 nt106 062 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWW11_RS04985GCF_003464575#DWW11_RS04985
RROmpR
104 267-104 989 nt · Forward (+)
DWW11_RS04990GCF_003464575#DWW11_RS04990
HKClassicCurrent focus
104 989-106 062 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003464575#DWW11_RS04990The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2766499
Simplified PFAM architecture for HKOC_2766499
PFAM domain coverage: 231 / 357 aa (64.7%)
1 aa357 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[73-126] | HisKA[131-195] | HATPase_c[240-351]
- Domain count: 3
- Matched identifier: HKOC_2766499
- Positioned domains: HAMP 73-126 ; HisKA 131-195 ; HATPase_c 240-351
Cluster members and taxonomy
Representative gene: GCF_003464575#DWW11_RS04990
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 2 over 2 total members. Page 1 / 1.
GCF_003464575#DWW11_RS04990 (representative) |
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003464575
AssemblyASM346457v1 · Scaffoldhaploid
Genome composition2 409 077 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 22 · HK 10 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key