1 HisKA_3#1
80-143 aa · 64 aa · 20.3% of protein
Raw token
HisKA_3:80:0.0000000000000301:143:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA31_RS00325
Histidine kinase, Classic
Bifidobacterium longum · GCF_003463285
ClassHKTypeClassicLength315 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003463285#DXA31_RS00325Stable P2CS identifier used across views.
GenomeGCF_003463285Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length315 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 315 aa (58.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
190-308 aa · 119 aa · 37.8% of protein
Raw token
HATPase_c:190:0.000000167:308:120:109- Raw architecture: HisKA_3:80:0.0000000000000301:143:64:68#HATPase_c:190:0.000000167:308:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003463285::NZ_QSDD01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span75434-77036Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA31_00325RefSeq proteinWP_259301491.1
Context group ID
GCF_003463285::NZ_QSDD01000001.1::G00002Context members
DXA31_RS00320DXA31_RS00325
Partner locus tags
DXA31_RS00320DXA31_RS00325
Partner old locus tags
DXA31_00320DXA31_00325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_259301491.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA31_RS00325Primary locus identifier stored in the genes table.
Old locus tagDXA31_00325Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSDD01000001.1Sequence record reported by the local genomic context database.
Genomic interval76 087-77 036 nt950 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span75 434-77 036 ntGCF_003463285::NZ_QSDD01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003463285::NZ_QSDD01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSDD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span75 434-77 036 nt1 603 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 434 nt77 036 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA31_RS00320GCF_003463285#DXA31_RS00320
RRNarL
75 434-76 087 nt · Reverse (-)
DXA31_RS00325GCF_003463285#DXA31_RS00325
HKClassicCurrent focus
76 087-77 036 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_017312625#J3469_RS02040Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1838927
Simplified PFAM architecture for HKOC_1838927
PFAM domain coverage: 66 / 460 aa (14.3%)
1 aa460 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[225-290]
- Domain count: 1
- Matched identifier: HKOC_1838927
- Positioned domains: HisKA_3 225-290
Cluster members and taxonomy
Representative gene: GCF_017312625#J3469_RS02040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003463285
AssemblyASM346328v1 · Scaffoldhaploid
Genome composition2 248 299 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key