1 HisKA#1
206-271 aa · 66 aa · 15.6% of protein
Raw token
HisKA:206:0.000000016:271:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA41_RS15800
Histidine kinase, Classic
Coprobacillus cateniformis · GCF_003463235
ClassHKTypeClassicLength423 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003463235#DXA41_RS15800Stable P2CS identifier used across views.
GenomeGCF_003463235Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length423 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 423 aa (40.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa423 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
318-423 aa · 106 aa · 25.1% of protein
Raw token
HATPase_c:318:1.27e-18:423:107:109- Raw architecture: HisKA:206:0.000000016:271:66:64#HATPase_c:318:1.27e-18:423:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003463235::NZ_QSCY01000032.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8001-9939Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA41_15790RefSeq proteinWP_008788720.1
Context group ID
GCF_003463235::NZ_QSCY01000032.1::G00028Context members
DXA41_RS15795DXA41_RS15800
Partner locus tags
DXA41_RS15795DXA41_RS15800
Partner old locus tags
DXA41_15785DXA41_15790
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008788720.1Primary protein accession used for annex mappings.
UniProt accessionE7GA22Primary UniProt accession resolved in the annex database.
UniProt IDE7GA22_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA41_RS15800Primary locus identifier stored in the genes table.
Old locus tagDXA41_15790Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSCY01000032.1Sequence record reported by the local genomic context database.
Genomic interval8 668-9 939 nt1 272 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 001-9 939 ntGCF_003463235::NZ_QSCY01000032.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003463235::NZ_QSCY01000032.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSCY01000032.1All displayed genes belong to this local TCS context.
Neighborhood span8 001-9 939 nt1 939 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 001 nt9 939 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA41_RS15795GCF_003463235#DXA41_RS15795
RROmpR
8 001-8 681 nt · Forward (+)
DXA41_RS15800GCF_003463235#DXA41_RS15800
HKClassicCurrent focus
8 668-9 939 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS08085Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2235530
Simplified PFAM architecture for HKOC_2235530
PFAM domain coverage: 166 / 423 aa (39.2%)
1 aa423 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[207-270] | HATPase_c[318-419]
- Domain count: 2
- Matched identifier: HKOC_2235530
- Positioned domains: HisKA 207-270 ; HATPase_c 318-419
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS08085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_003463235
AssemblyASM346323v1 · Scaffoldhaploid
Genome composition3 803 755 bp · 31,0% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key