1 Response_reg#1
4-116 aa · 113 aa · 21.8% of protein
Raw token
Response_reg:4:4.49e-27:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA56_RS02755
Response regulator, unclassified
Blautia obeum · GCF_003463085
ClassRRTypeunclassifiedLength518 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003463085#DXA56_RS02755Stable P2CS identifier used across views.
GenomeGCF_003463085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length518 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage182 / 518 aa (35.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa518 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
431-464 aa · 34 aa · 6.6% of protein
Raw token
HTH_AraC:431:0.00000235:464:34:423 HTH_AraC#3
479-513 aa · 35 aa · 6.8% of protein
Raw token
HTH_AraC:479:0.0000005:513:35:42- Raw architecture: Response_reg:4:4.49e-27:116:113:111#HTH_AraC:431:0.00000235:464:34:42#HTH_AraC:479:0.0000005:513:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003463085::NZ_QSCN01000002.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span70750-74159Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA56_02755RefSeq proteinWP_055055969.1
Context group ID
GCF_003463085::NZ_QSCN01000002.1::G00019Context members
DXA56_RS02755DXA56_RS02760
Partner locus tags
DXA56_RS02755DXA56_RS02760
Partner old locus tags
DXA56_02755DXA56_02760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055055969.1Primary protein accession used for annex mappings.
UniProt accessionA0A174NTM0Primary UniProt accession resolved in the annex database.
UniProt IDA0A174NTM0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA56_RS02755Primary locus identifier stored in the genes table.
Old locus tagDXA56_02755Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSCN01000002.1Sequence record reported by the local genomic context database.
Genomic interval70 750-72 306 nt1 557 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span70 750-74 159 ntGCF_003463085::NZ_QSCN01000002.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003463085::NZ_QSCN01000002.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSCN01000002.1All displayed genes belong to this local TCS context.
Neighborhood span70 750-74 159 nt3 410 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 750 nt74 159 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA56_RS02755GCF_003463085#DXA56_RS02755
RRunclassifiedCurrent focus
70 750-72 306 nt · Forward (+)
DXA56_RS02760GCF_003463085#DXA56_RS02760
HKClassic
72 303-74 159 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405215#ARA06_RS07955Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0129296
Simplified PFAM architecture for RROC_0129296
PFAM domain coverage: 191 / 518 aa (36.9%)
1 aa518 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[438-515]
- Domain count: 2
- Matched identifier: RROC_0129296
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 438-515 ; HTH_18 438-515
Cluster members and taxonomy
Representative gene: GCF_001405215#ARA06_RS07955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003463085
AssemblyASM346308v1 · Scaffoldhaploid
Genome composition3 593 000 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 99 · HK 53 · RR 45CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key