1 Response_reg#1
5-114 aa · 110 aa · 49.1% of protein
Raw token
Response_reg:5:1.88e-24:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA75_RS11555
Response regulator OmpR family
Thomasclavelia ramosa · GCF_003462905
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003462905#DXA75_RS11555Stable P2CS identifier used across views.
GenomeGCF_003462905Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 224 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-219 aa · 74 aa · 33.0% of protein
Raw token
Trans_reg_C:146:1.57e-22:219:77:77- Raw architecture: Response_reg:5:1.88e-24:114:110:111#Trans_reg_C:146:1.57e-22:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003462905::NZ_QSCB01000015.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3536-5420Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA75_11550RefSeq proteinWP_008792785.1
Context group ID
GCF_003462905::NZ_QSCB01000015.1::G00008Context members
DXA75_RS11555DXA75_RS11560
Partner locus tags
DXA75_RS11555DXA75_RS11560
Partner old locus tags
DXA75_11550DXA75_11555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008792785.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3EDU1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3EDU1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA75_RS11555Primary locus identifier stored in the genes table.
Old locus tagDXA75_11550Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSCB01000015.1Sequence record reported by the local genomic context database.
Genomic interval3 536-4 210 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 536-5 420 ntGCF_003462905::NZ_QSCB01000015.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003462905::NZ_QSCB01000015.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSCB01000015.1All displayed genes belong to this local TCS context.
Neighborhood span3 536-5 420 nt1 885 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 536 nt5 420 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA75_RS11555GCF_003462905#DXA75_RS11555
RROmpRCurrent focus
3 536-4 210 nt · Forward (+)
DXA75_RS11560GCF_003462905#DXA75_RS11560
HKClassic
4 203-5 420 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS00625Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1529071
Simplified PFAM architecture for RROC_1529071
PFAM domain coverage: 183 / 224 aa (81.7%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[147-219]
- Domain count: 2
- Matched identifier: RROC_1529071
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 147-219 ; Trans_reg_C 147-219
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS00625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003462905
AssemblyASM346290v1 · Scaffoldhaploid
Genome composition3 703 302 bp · 31,0% GCThomasclavelia ramosa
Signal transduction countsGenes 50 · HK 23 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key