1 Response_reg#1
6-102 aa · 97 aa · 41.5% of protein
Raw token
Response_reg:6:0.000000000257:102:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA75_RS08150
Response regulator LytTR family
Thomasclavelia ramosa · GCF_003462905
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003462905#DXA75_RS08150Stable P2CS identifier used across views.
GenomeGCF_003462905Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 234 aa (81.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 LytTR#2
133-225 aa · 93 aa · 39.7% of protein
Raw token
LytTR:133:0.00000000000035:225:98:98- Raw architecture: Response_reg:6:0.000000000257:102:104:111#LytTR:133:0.00000000000035:225:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003462905::NZ_QSCB01000008.1::G00027
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span116180-116884Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA75_08145RefSeq proteinWP_003539617.1
Context group ID
GCF_003462905::NZ_QSCB01000008.1::G00027Context members
DXA75_RS08150
Partner locus tags
DXA75_RS08150
Partner old locus tags
DXA75_08145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003539617.1Primary protein accession used for annex mappings.
UniProt accessionB0N955Primary UniProt accession resolved in the annex database.
UniProt IDB0N955_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA75_RS08150Primary locus identifier stored in the genes table.
Old locus tagDXA75_08145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSCB01000008.1Sequence record reported by the local genomic context database.
Genomic interval116 180-116 884 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span116 180-116 884 ntGCF_003462905::NZ_QSCB01000008.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003462905::NZ_QSCB01000008.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSCB01000008.1All displayed genes belong to this local TCS context.
Neighborhood span116 180-116 884 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
116 180 nt116 884 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA75_RS08150GCF_003462905#DXA75_RS08150
RRLytTRCurrent focus
116 180-116 884 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS15130Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047406
Simplified PFAM architecture for RROC_1047406
PFAM domain coverage: 196 / 234 aa (83.8%)
1 aa234 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-110] | LytTR[136-225]
- Domain count: 2
- Matched identifier: RROC_1047406
- Positioned domains: Response_reg 5-110 ; Response_reg 5-110 ; LytTR 136-225 ; LytTR 136-225
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS15130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003462905
AssemblyASM346290v1 · Scaffoldhaploid
Genome composition3 703 302 bp · 31,0% GCThomasclavelia ramosa
Signal transduction countsGenes 50 · HK 23 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key