1 HAMP#1
175-244 aa · 70 aa · 14.6% of protein
Raw token
HAMP:175:7.11e-16:244:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA75_RS06635
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_003462905
ClassHKTypeClassicLength479 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003462905#DXA75_RS06635Stable P2CS identifier used across views.
GenomeGCF_003462905Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length479 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage234 / 479 aa (48.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa479 aa
Domain-by-domain annotation3 items
2 HisKA#2
259-315 aa · 57 aa · 11.9% of protein
Raw token
HisKA:259:0.00000000115:315:57:643 HATPase_c#3
365-471 aa · 107 aa · 22.3% of protein
Raw token
HATPase_c:365:7.79e-25:471:107:109- Raw architecture: HAMP:175:7.11e-16:244:70:69#HisKA:259:0.00000000115:315:57:64#HATPase_c:365:7.79e-25:471:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003462905::NZ_QSCB01000006.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span116292-118387Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA75_06630RefSeq proteinWP_118232511.1
Context group ID
GCF_003462905::NZ_QSCB01000006.1::G00025Context members
DXA75_RS06635DXA75_RS06640
Partner locus tags
DXA75_RS06635DXA75_RS06640
Partner old locus tags
DXA75_06630DXA75_06635
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118232511.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA75_RS06635Primary locus identifier stored in the genes table.
Old locus tagDXA75_06630Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSCB01000006.1Sequence record reported by the local genomic context database.
Genomic interval116 292-117 731 nt1 440 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span116 292-118 387 ntGCF_003462905::NZ_QSCB01000006.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003462905::NZ_QSCB01000006.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSCB01000006.1All displayed genes belong to this local TCS context.
Neighborhood span116 292-118 387 nt2 096 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
116 292 nt118 387 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA75_RS06635GCF_003462905#DXA75_RS06635
HKClassicCurrent focus
116 292-117 731 nt · Reverse (-)
DXA75_RS06640GCF_003462905#DXA75_RS06640
RROmpR
117 731-118 387 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003457805#DWY98_RS10200Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1630220
Simplified PFAM architecture for HKOC_1630220
PFAM domain coverage: 217 / 479 aa (45.3%)
1 aa479 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[193-243] | HisKA[257-315] | HATPase_c[365-471]
- Domain count: 3
- Matched identifier: HKOC_1630220
- Positioned domains: HAMP 193-243 ; HisKA 257-315 ; HATPase_c 365-471
Cluster members and taxonomy
Representative gene: GCF_003457805#DWY98_RS10200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003462905
AssemblyASM346290v1 · Scaffoldhaploid
Genome composition3 703 302 bp · 31,0% GCThomasclavelia ramosa
Signal transduction countsGenes 50 · HK 23 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key