1 Response_reg#1
4-112 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:4:1.94e-26:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA75_RS05855
Response regulator OmpR family
Thomasclavelia ramosa · GCF_003462905
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003462905#DXA75_RS05855Stable P2CS identifier used across views.
GenomeGCF_003462905Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 223 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-221 aa · 75 aa · 33.6% of protein
Raw token
Trans_reg_C:147:1.11e-29:221:75:77- Raw architecture: Response_reg:4:1.94e-26:112:111:111#Trans_reg_C:147:1.11e-29:221:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003462905::NZ_QSCB01000005.1::G00024
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span125043-125714Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA75_05850RefSeq proteinWP_118232482.1
Context group ID
GCF_003462905::NZ_QSCB01000005.1::G00024Context members
DXA75_RS05855
Partner locus tags
DXA75_RS05855
Partner old locus tags
DXA75_05850
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118232482.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA75_RS05855Primary locus identifier stored in the genes table.
Old locus tagDXA75_05850Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSCB01000005.1Sequence record reported by the local genomic context database.
Genomic interval125 043-125 714 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span125 043-125 714 ntGCF_003462905::NZ_QSCB01000005.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003462905::NZ_QSCB01000005.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSCB01000005.1All displayed genes belong to this local TCS context.
Neighborhood span125 043-125 714 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
125 043 nt125 714 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA75_RS05855GCF_003462905#DXA75_RS05855
RROmpRCurrent focus
125 043-125 714 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020562445#LI224_RS03410Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1222788
Simplified PFAM architecture for RROC_1222788
PFAM domain coverage: 182 / 230 aa (79.1%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[11-118] | Trans_reg_C[154-227]
- Domain count: 2
- Matched identifier: RROC_1222788
- Positioned domains: Response_reg 11-118 ; Trans_reg_C 154-227
Cluster members and taxonomy
Representative gene: GCF_020562445#LI224_RS03410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003462905
AssemblyASM346290v1 · Scaffoldhaploid
Genome composition3 703 302 bp · 31,0% GCThomasclavelia ramosa
Signal transduction countsGenes 50 · HK 23 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key