1 HisKA#1
45-101 aa · 57 aa · 25.1% of protein
Raw token
HisKA:45:0.0000000000000934:101:57:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA75_RS05840
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_003462905
ClassHKTypeClassicLength227 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003462905#DXA75_RS05840Stable P2CS identifier used across views.
GenomeGCF_003462905Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage135 / 227 aa (59.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
150-227 aa · 78 aa · 34.4% of protein
Raw token
HATPase_c:150:0.0000000000366:227:85:109- Raw architecture: HisKA:45:0.0000000000000934:101:57:64#HATPase_c:150:0.0000000000366:227:85:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003462905::NZ_QSCB01000005.1::G00023
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span122624-123307Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA75_05835RefSeq proteinWP_199414830.1
Context group ID
GCF_003462905::NZ_QSCB01000005.1::G00023Context members
DXA75_RS05840
Partner locus tags
DXA75_RS05840
Partner old locus tags
DXA75_05835
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199414830.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA75_RS05840Primary locus identifier stored in the genes table.
Old locus tagDXA75_05835Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSCB01000005.1Sequence record reported by the local genomic context database.
Genomic interval122 624-123 307 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span122 624-123 307 ntGCF_003462905::NZ_QSCB01000005.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003462905::NZ_QSCB01000005.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSCB01000005.1All displayed genes belong to this local TCS context.
Neighborhood span122 624-123 307 nt684 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
122 624 nt123 307 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA75_RS05840GCF_003462905#DXA75_RS05840
HKClassicCurrent focus
122 624-123 307 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003462905#DXA75_RS05840The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2926781
Simplified PFAM architecture for HKOC_2926781
PFAM domain coverage: 135 / 227 aa (59.5%)
1 aa227 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[44-101] | HATPase_c[150-226]
- Domain count: 2
- Matched identifier: HKOC_2926781
- Positioned domains: HisKA 44-101 ; HATPase_c 150-226
Cluster members and taxonomy
Representative gene: GCF_003462905#DXA75_RS05840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003462905
AssemblyASM346290v1 · Scaffoldhaploid
Genome composition3 703 302 bp · 31,0% GCThomasclavelia ramosa
Signal transduction countsGenes 50 · HK 23 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key