1 CheW#1
15-149 aa · 135 aa · 44.9% of protein
Raw token
CheW:15:5.02e-36:149:138:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB43_RS03060
Response regulator CheV family
Roseburia sp. OM04-10BH · GCF_003462605
ClassRRTypeCheVLength301 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003462605#DXB43_RS03060Stable P2CS identifier used across views.
GenomeGCF_003462605Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length301 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage256 / 301 aa (85.0%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa301 aa
Domain-by-domain annotation2 items
2 Response_reg#2
173-293 aa · 121 aa · 40.2% of protein
Raw token
Response_reg:173:4.12e-21:293:122:111- Raw architecture: CheW:15:5.02e-36:149:138:138#Response_reg:173:4.12e-21:293:122:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003462605::NZ_QTZI01000002.1::G00017
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span133151-134056Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB43_03060RefSeq proteinWP_117698212.1
Context group ID
GCF_003462605::NZ_QTZI01000002.1::G00017Context members
DXB43_RS03060
Partner locus tags
DXB43_RS03060
Partner old locus tags
DXB43_03060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117698212.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB43_RS03060Primary locus identifier stored in the genes table.
Old locus tagDXB43_03060Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTZI01000002.1Sequence record reported by the local genomic context database.
Genomic interval133 151-134 056 nt906 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span133 151-134 056 ntGCF_003462605::NZ_QTZI01000002.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003462605::NZ_QTZI01000002.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTZI01000002.1All displayed genes belong to this local TCS context.
Neighborhood span133 151-134 056 nt906 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
133 151 nt134 056 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB43_RS03060GCF_003462605#DXB43_RS03060
RRCheVCurrent focus
133 151-134 056 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435965#DW059_RS06360Use this link to inspect the representative gene detail.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0570653
Simplified PFAM architecture for RROC_0570653
PFAM domain coverage: 254 / 301 aa (84.4%)
1 aa301 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[15-148] | Response_reg[173-292]
- Domain count: 2
- Matched identifier: RROC_0570653
- Positioned domains: CheW 15-148 ; CheW 15-148 ; Response_reg 173-292 ; Response_reg 173-292
Cluster members and taxonomy
Representative gene: GCF_003435965#DW059_RS06360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 142 · GCF_003462605
AssemblyASM346260v1 · Scaffoldhaploid
Genome composition3 084 784 bp · 41,0% GCRoseburia sp. OM04-10BH
Signal transduction countsGenes 77 · HK 35 · RR 41CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key