1 Response_reg#1
1-102 aa · 102 aa · 47.4% of protein
Raw token
Response_reg:1:1.89e-35:102:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW746_RS05985
Response regulator OmpR family
Blautia sp. AM28-36 · GCF_003462165
ClassRRTypeOmpRLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003462165#DW746_RS05985Stable P2CS identifier used across views.
GenomeGCF_003462165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 215 aa (82.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
134-209 aa · 76 aa · 35.3% of protein
Raw token
Trans_reg_C:134:4.43e-22:209:78:77- Raw architecture: Response_reg:1:1.89e-35:102:102:111#Trans_reg_C:134:4.43e-22:209:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003462165::NZ_QTYM01000003.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26354-28170Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW746_05995RefSeq proteinWP_243004565.1
Context group ID
GCF_003462165::NZ_QTYM01000003.1::G00039Context members
DW746_RS05980DW746_RS05985
Partner locus tags
DW746_RS05980DW746_RS05985
Partner old locus tags
DW746_05990DW746_05995
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243004565.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW746_RS05985Primary locus identifier stored in the genes table.
Old locus tagDW746_05995Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTYM01000003.1Sequence record reported by the local genomic context database.
Genomic interval27 523-28 170 nt648 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span26 354-28 170 ntGCF_003462165::NZ_QTYM01000003.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003462165::NZ_QTYM01000003.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTYM01000003.1All displayed genes belong to this local TCS context.
Neighborhood span26 354-28 170 nt1 817 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 354 nt28 170 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW746_RS05980GCF_003462165#DW746_RS05980
HKClassic
26 354-27 526 nt · Reverse (-)
DW746_RS05985GCF_003462165#DW746_RS05985
RROmpRCurrent focus
27 523-28 170 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003462165#DW746_RS05985The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1913331
Simplified PFAM architecture for RROC_1913331
PFAM domain coverage: 173 / 215 aa (80.5%)
1 aa215 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-102] | Trans_reg_C[136-208]
- Domain count: 2
- Matched identifier: RROC_1913331
- Positioned domains: Response_reg 3-102 ; Response_reg 3-102 ; Trans_reg_C 136-208 ; Trans_reg_C 136-208
Cluster members and taxonomy
Representative gene: GCF_003462165#DW746_RS05985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 974 · GCF_003462165
AssemblyASM346216v1 · Scaffoldhaploid
Genome composition3 801 735 bp · 47,0% GCBlautia sp. AM28-36
Signal transduction countsGenes 102 · HK 51 · RR 49CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key