1 Response_reg#1
3-116 aa · 114 aa · 26.6% of protein
Raw token
Response_reg:3:3.77e-24:116:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW746_RS03680
Response regulator, unclassified
Blautia sp. AM28-36 · GCF_003462165
ClassRRTypeunclassifiedLength428 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003462165#DW746_RS03680Stable P2CS identifier used across views.
GenomeGCF_003462165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length428 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 428 aa (44.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa428 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
328-367 aa · 40 aa · 9.3% of protein
Raw token
HTH_AraC:328:0.00000131:367:40:423 HTH_AraC#3
383-418 aa · 36 aa · 8.4% of protein
Raw token
HTH_AraC:383:0.0000000046:418:36:42- Raw architecture: Response_reg:3:3.77e-24:116:114:111#HTH_AraC:328:0.00000131:367:40:42#HTH_AraC:383:0.0000000046:418:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003462165::NZ_QTYM01000001.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span756032-759012Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW746_03695RefSeq proteinWP_117760577.1
Context group ID
GCF_003462165::NZ_QTYM01000001.1::G00008Context members
DW746_RS03680DW746_RS03685
Partner locus tags
DW746_RS03680DW746_RS03685
Partner old locus tags
DW746_03695DW746_03700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117760577.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW746_RS03680Primary locus identifier stored in the genes table.
Old locus tagDW746_03695Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTYM01000001.1Sequence record reported by the local genomic context database.
Genomic interval756 032-757 318 nt1 287 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span756 032-759 012 ntGCF_003462165::NZ_QTYM01000001.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003462165::NZ_QTYM01000001.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTYM01000001.1All displayed genes belong to this local TCS context.
Neighborhood span756 032-759 012 nt2 981 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
756 032 nt759 012 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW746_RS03680GCF_003462165#DW746_RS03680
RRunclassifiedCurrent focus
756 032-757 318 nt · Reverse (-)
DW746_RS03685GCF_003462165#DW746_RS03685
HKClassic
757 315-759 012 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460685#DXA55_RS05740Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0347153
Simplified PFAM architecture for RROC_0347153
PFAM domain coverage: 190 / 428 aa (44.4%)
1 aa428 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-115] | HTH_18[342-418]
- Domain count: 2
- Matched identifier: RROC_0347153
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; HTH_18 342-418 ; HTH_18 342-418
Cluster members and taxonomy
Representative gene: GCF_003460685#DXA55_RS05740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 974 · GCF_003462165
AssemblyASM346216v1 · Scaffoldhaploid
Genome composition3 801 735 bp · 47,0% GCBlautia sp. AM28-36
Signal transduction countsGenes 102 · HK 51 · RR 49CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key