1 dCache_1#1
47-284 aa · 238 aa · 39.7% of protein
Raw token
dCache_1:47:0.000000000000161:284:244:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWV73_RS00390
Histidine kinase, Classic
Clostridium sp. AF12-41 · GCF_003461685
ClassHKTypeClassicLength599 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003461685#DWV73_RS00390Stable P2CS identifier used across views.
GenomeGCF_003461685Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length599 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage496 / 599 aa (82.8%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa599 aa
Domain-by-domain annotation4 items
2 HAMP#2
301-369 aa · 69 aa · 11.5% of protein
Raw token
HAMP:301:0.0000000000235:369:69:693 His_kinase#3
386-464 aa · 79 aa · 13.2% of protein
Raw token
His_kinase:386:4.78e-35:464:79:804 HATPase_c#4
480-589 aa · 110 aa · 18.4% of protein
Raw token
HATPase_c:480:1.58e-18:589:112:109- Raw architecture: dCache_1:47:0.000000000000161:284:244:195#HAMP:301:0.0000000000235:369:69:69#His_kinase:386:4.78e-35:464:79:80#HATPase_c:480:1.58e-18:589:112:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003461685::NZ_QTXO01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span92712-96139Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWV73_00390RefSeq proteinWP_117795062.1
Context group ID
GCF_003461685::NZ_QTXO01000001.1::G00002Context members
DWV73_RS00385DWV73_RS00390
Partner locus tags
DWV73_RS00385DWV73_RS00390
Partner old locus tags
DWV73_00385DWV73_00390
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117795062.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWV73_RS00390Primary locus identifier stored in the genes table.
Old locus tagDWV73_00390Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTXO01000001.1Sequence record reported by the local genomic context database.
Genomic interval94 340-96 139 nt1 800 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span92 712-96 139 ntGCF_003461685::NZ_QTXO01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003461685::NZ_QTXO01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTXO01000001.1All displayed genes belong to this local TCS context.
Neighborhood span92 712-96 139 nt3 428 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
92 712 nt96 139 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWV73_RS00385GCF_003461685#DWV73_RS00385
RRunclassified
92 712-94 340 nt · Forward (+)
DWV73_RS00390GCF_003461685#DWV73_RS00390
HKClassicCurrent focus
94 340-96 139 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003461685#DWV73_RS00390The current gene is the representative for this cluster.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1058356
Simplified PFAM architecture for HKOC_1058356
PFAM domain coverage: 474 / 599 aa (79.1%)
1 aa599 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[49-283] | HAMP[319-369] | His_kinase[386-464] | HATPase_c[479-587]
- Domain count: 4
- Matched identifier: HKOC_1058356
- Positioned domains: dCache_1 49-283 ; HAMP 319-369 ; His_kinase 386-464 ; HATPase_c 479-587
Cluster members and taxonomy
Representative gene: GCF_003461685#DWV73_RS00390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 994 · GCF_003461685
AssemblyASM346168v1 · Scaffoldhaploid
Genome composition2 783 658 bp · 49,0% GCClostridium sp. AF12-41
Signal transduction countsGenes 51 · HK 27 · RR 22CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key