1 HAMP#1
279-349 aa · 71 aa · 12.0% of protein
Raw token
HAMP:279:0.000000486:349:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ44_RS07240
Histidine kinase, Classic
Blautia sp. AF32-4BH · GCF_003460565
ClassHKTypeClassicLength590 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003460565#DWZ44_RS07240Stable P2CS identifier used across views.
GenomeGCF_003460565Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length590 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage225 / 590 aa (38.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa590 aa
Domain-by-domain annotation3 items
2 His_kinase#2
364-437 aa · 74 aa · 12.5% of protein
Raw token
His_kinase:364:1.71e-19:437:74:803 HATPase_c#3
466-545 aa · 80 aa · 13.6% of protein
Raw token
HATPase_c:466:0.000000577:545:84:109- Raw architecture: HAMP:279:0.000000486:349:71:69#His_kinase:364:1.71e-19:437:74:80#HATPase_c:466:0.000000577:545:84:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003460565::NZ_QTVL01000004.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span223290-226658Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ44_07255RefSeq proteinWP_158565838.1
Context group ID
GCF_003460565::NZ_QTVL01000004.1::G00038Context members
DWZ44_RS07240DWZ44_RS07245
Partner locus tags
DWZ44_RS07240DWZ44_RS07245
Partner old locus tags
DWZ44_07255DWZ44_07260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_158565838.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ44_RS07240Primary locus identifier stored in the genes table.
Old locus tagDWZ44_07255Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTVL01000004.1Sequence record reported by the local genomic context database.
Genomic interval223 290-225 062 nt1 773 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span223 290-226 658 ntGCF_003460565::NZ_QTVL01000004.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460565::NZ_QTVL01000004.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTVL01000004.1All displayed genes belong to this local TCS context.
Neighborhood span223 290-226 658 nt3 369 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
223 290 nt226 658 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ44_RS07240GCF_003460565#DWZ44_RS07240
HKClassicCurrent focus
223 290-225 062 nt · Forward (+)
DWZ44_RS07245GCF_003460565#DWZ44_RS07245
RRunclassified
225 081-226 658 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460565#DWZ44_RS07240The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1111236
Simplified PFAM architecture for HKOC_1111236
PFAM domain coverage: 177 / 590 aa (30.0%)
1 aa590 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[365-441] | HATPase_c[462-561]
- Domain count: 2
- Matched identifier: HKOC_1111236
- Positioned domains: His_kinase 365-441 ; HATPase_c 462-561
Cluster members and taxonomy
Representative gene: GCF_003460565#DWZ44_RS07240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 967 · GCF_003460565
AssemblyASM346056v1 · Scaffoldhaploid
Genome composition3 839 213 bp · 46,5% GCBlautia sp. AF32-4BH
Signal transduction countsGenes 91 · HK 46 · RR 43CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key