1 SBP_bac_3#1
49-253 aa · 205 aa · 21.7% of protein
Raw token
SBP_bac_3:49:1.74e-33:253:215:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ44_RS04785
Histidine kinase, Hybrid
Blautia sp. AF32-4BH · GCF_003460565
ClassHKTypeHybridLength943 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003460565#DWZ44_RS04785Stable P2CS identifier used across views.
GenomeGCF_003460565Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length943 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage711 / 943 aa (75.4%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa943 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
282-485 aa · 204 aa · 21.6% of protein
Raw token
SBP_bac_3:282:0.00000000000439:485:218:2243 HisKA#3
566-631 aa · 66 aa · 7.0% of protein
Raw token
HisKA:566:3.66e-19:631:66:644 HATPase_c#4
679-796 aa · 118 aa · 12.5% of protein
Raw token
HATPase_c:679:7.48e-28:796:119:1095 Response_reg#5
819-936 aa · 118 aa · 12.5% of protein
Raw token
Response_reg:819:3.38e-30:936:118:111- Raw architecture: SBP_bac_3:49:1.74e-33:253:215:224#SBP_bac_3:282:0.00000000000439:485:218:224#HisKA:566:3.66e-19:631:66:64#HATPase_c:679:7.48e-28:796:119:109#Response_reg:819:3.38e-30:936:118:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003460565::NZ_QTVL01000003.1::G00028
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span5673-8504Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ44_04800RefSeq proteinWP_117804343.1
Context group ID
GCF_003460565::NZ_QTVL01000003.1::G00028Context members
DWZ44_RS04785
Partner locus tags
DWZ44_RS04785
Partner old locus tags
DWZ44_04800
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117804343.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ44_RS04785Primary locus identifier stored in the genes table.
Old locus tagDWZ44_04800Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTVL01000003.1Sequence record reported by the local genomic context database.
Genomic interval5 673-8 504 nt2 832 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 673-8 504 ntGCF_003460565::NZ_QTVL01000003.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460565::NZ_QTVL01000003.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTVL01000003.1All displayed genes belong to this local TCS context.
Neighborhood span5 673-8 504 nt2 832 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 673 nt8 504 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWZ44_RS04785GCF_003460565#DWZ44_RS04785
HKHybridCurrent focus
5 673-8 504 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460565#DWZ44_RS04785The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0337154
Simplified PFAM architecture for HKOC_0337154
PFAM domain coverage: 698 / 943 aa (74.0%)
1 aa943 aa
SBP_bac_3SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[49-241] | SBP_bac_3[282-485] | HisKA[566-631] | HATPase_c[679-795] | Response_reg[819-936]
- Domain count: 5
- Matched identifier: HKOC_0337154
- Positioned domains: SBP_bac_3 49-241 ; SBP_bac_3 282-485 ; HisKA 566-631 ; HATPase_c 679-795 ; Response_reg 819-936
Cluster members and taxonomy
Representative gene: GCF_003460565#DWZ44_RS04785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 967 · GCF_003460565
AssemblyASM346056v1 · Scaffoldhaploid
Genome composition3 839 213 bp · 46,5% GCBlautia sp. AF32-4BH
Signal transduction countsGenes 91 · HK 46 · RR 43CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key