1 Response_reg#1
4-116 aa · 113 aa · 46.7% of protein
Raw token
Response_reg:4:0.000000000000854:116:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ44_RS04125
Response regulator LytTR family
Blautia sp. AF32-4BH · GCF_003460565
ClassRRTypeLytTRLength242 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003460565#DWZ44_RS04125Stable P2CS identifier used across views.
GenomeGCF_003460565Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage199 / 242 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa242 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-226 aa · 86 aa · 35.5% of protein
Raw token
LytTR:141:1.73e-21:226:91:98- Raw architecture: Response_reg:4:0.000000000000854:116:115:111#LytTR:141:1.73e-21:226:91:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003460565::NZ_QTVL01000002.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span279340-280068Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ44_04140RefSeq proteinWP_117804264.1
Context group ID
GCF_003460565::NZ_QTVL01000002.1::G00018Context members
DWZ44_RS04125
Partner locus tags
DWZ44_RS04125
Partner old locus tags
DWZ44_04140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117804264.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ44_RS04125Primary locus identifier stored in the genes table.
Old locus tagDWZ44_04140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTVL01000002.1Sequence record reported by the local genomic context database.
Genomic interval279 340-280 068 nt729 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span279 340-280 068 ntGCF_003460565::NZ_QTVL01000002.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460565::NZ_QTVL01000002.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTVL01000002.1All displayed genes belong to this local TCS context.
Neighborhood span279 340-280 068 nt729 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
279 340 nt280 068 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWZ44_RS04125GCF_003460565#DWZ44_RS04125
RRLytTRCurrent focus
279 340-280 068 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460565#DWZ44_RS04125The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0848505
Simplified PFAM architecture for RROC_0848505
PFAM domain coverage: 202 / 242 aa (83.5%)
1 aa242 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[141-229]
- Domain count: 2
- Matched identifier: RROC_0848505
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; LytTR 141-229 ; LytTR 141-229
Cluster members and taxonomy
Representative gene: GCF_003460565#DWZ44_RS04125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 967 · GCF_003460565
AssemblyASM346056v1 · Scaffoldhaploid
Genome composition3 839 213 bp · 46,5% GCBlautia sp. AF32-4BH
Signal transduction countsGenes 91 · HK 46 · RR 43CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key