1 HAMP#1
202-269 aa · 68 aa · 13.0% of protein
Raw token
HAMP:202:0.00000000000000283:269:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWW89_RS12860
Histidine kinase, Classic
Agathobacter rectalis · GCF_003460385
ClassHKTypeClassicLength523 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003460385#DWW89_RS12860Stable P2CS identifier used across views.
GenomeGCF_003460385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length523 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage263 / 523 aa (50.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa523 aa
Domain-by-domain annotation3 items
2 HisKA#2
280-340 aa · 61 aa · 11.7% of protein
Raw token
HisKA:280:0.0000000000288:340:61:643 HATPase_c#3
389-522 aa · 134 aa · 25.6% of protein
Raw token
HATPase_c:389:9.37e-19:522:134:109- Raw architecture: HAMP:202:0.00000000000000283:269:68:69#HisKA:280:0.0000000000288:340:61:64#HATPase_c:389:9.37e-19:522:134:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003460385::NZ_QRXR01000025.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1332-3610Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWW89_12860RefSeq proteinWP_117994762.1
Context group ID
GCF_003460385::NZ_QRXR01000025.1::G00027Context members
DWW89_RS12860DWW89_RS12865
Partner locus tags
DWW89_RS12860DWW89_RS12865
Partner old locus tags
DWW89_12860DWW89_12865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117994762.1Primary protein accession used for annex mappings.
UniProt accessionA0A412RGV4Primary UniProt accession resolved in the annex database.
UniProt IDA0A412RGV4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWW89_RS12860Primary locus identifier stored in the genes table.
Old locus tagDWW89_12860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRXR01000025.1Sequence record reported by the local genomic context database.
Genomic interval1 332-2 903 nt1 572 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 332-3 610 ntGCF_003460385::NZ_QRXR01000025.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460385::NZ_QRXR01000025.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRXR01000025.1All displayed genes belong to this local TCS context.
Neighborhood span1 332-3 610 nt2 279 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 332 nt3 610 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWW89_RS12860GCF_003460385#DWW89_RS12860
HKClassicCurrent focus
1 332-2 903 nt · Reverse (-)
DWW89_RS12865GCF_003460385#DWW89_RS12865
RROmpR
2 957-3 610 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460385#DWW89_RS12860The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1380922
Simplified PFAM architecture for HKOC_1380922
PFAM domain coverage: 242 / 523 aa (46.3%)
1 aa523 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[217-267] | HisKA[281-339] | HATPase_c[391-522]
- Domain count: 3
- Matched identifier: HKOC_1380922
- Positioned domains: HAMP 217-267 ; HisKA 281-339 ; HATPase_c 391-522
Cluster members and taxonomy
Representative gene: GCF_003460385#DWW89_RS12860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003460385
AssemblyASM346038v1 · Scaffoldhaploid
Genome composition3 481 355 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 36 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key