1 HisKA#1
194-260 aa · 67 aa · 16.8% of protein
Raw token
HisKA:194:0.000000000000135:260:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWW89_RS12560
Histidine kinase, Classic
Agathobacter rectalis · GCF_003460385
ClassHKTypeClassicLength399 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003460385#DWW89_RS12560Stable P2CS identifier used across views.
GenomeGCF_003460385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length399 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 399 aa (38.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa399 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
312-397 aa · 86 aa · 21.6% of protein
Raw token
HATPase_c:312:0.0000828:397:105:109- Raw architecture: HisKA:194:0.000000000000135:260:67:64#HATPase_c:312:0.0000828:397:105:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003460385::NZ_QRXR01000023.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24633-26517Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWW89_12560RefSeq proteinWP_158564479.1
Context group ID
GCF_003460385::NZ_QRXR01000023.1::G00026Context members
DWW89_RS12555DWW89_RS12560
Partner locus tags
DWW89_RS12555DWW89_RS12560
Partner old locus tags
DWW89_12555DWW89_12560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_158564479.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWW89_RS12560Primary locus identifier stored in the genes table.
Old locus tagDWW89_12560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRXR01000023.1Sequence record reported by the local genomic context database.
Genomic interval25 318-26 517 nt1 200 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 633-26 517 ntGCF_003460385::NZ_QRXR01000023.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460385::NZ_QRXR01000023.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRXR01000023.1All displayed genes belong to this local TCS context.
Neighborhood span24 633-26 517 nt1 885 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 633 nt26 517 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWW89_RS12555GCF_003460385#DWW89_RS12555
RROmpR
24 633-25 328 nt · Forward (+)
DWW89_RS12560GCF_003460385#DWW89_RS12560
HKClassicCurrent focus
25 318-26 517 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460385#DWW89_RS12560The current gene is the representative for this cluster.
PFAM architectureHisKA1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2453234
Simplified PFAM architecture for HKOC_2453234
PFAM domain coverage: 64 / 399 aa (16.0%)
1 aa399 aa
HisKA
- Simplified architecture: HisKA
- Raw architecture: HisKA[195-258]
- Domain count: 1
- Matched identifier: HKOC_2453234
- Positioned domains: HisKA 195-258
Cluster members and taxonomy
Representative gene: GCF_003460385#DWW89_RS12560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003460385
AssemblyASM346038v1 · Scaffoldhaploid
Genome composition3 481 355 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 36 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key