1 HAMP#1
152-222 aa · 71 aa · 15.5% of protein
Raw token
HAMP:152:0.0000116:222:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWW89_RS07520
Histidine kinase, Classic
Agathobacter rectalis · GCF_003460385
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003460385#DWW89_RS07520Stable P2CS identifier used across views.
GenomeGCF_003460385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 458 aa (52.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
233-294 aa · 62 aa · 13.5% of protein
Raw token
HisKA:233:0.0000000000331:294:62:643 HATPase_c#3
346-451 aa · 106 aa · 23.1% of protein
Raw token
HATPase_c:346:3.66e-17:451:106:109- Raw architecture: HAMP:152:0.0000116:222:71:69#HisKA:233:0.0000000000331:294:62:64#HATPase_c:346:3.66e-17:451:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003460385::NZ_QRXR01000010.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11040-13066Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWW89_07520RefSeq proteinWP_117993845.1
Context group ID
GCF_003460385::NZ_QRXR01000010.1::G00003Context members
DWW89_RS07515DWW89_RS07520
Partner locus tags
DWW89_RS07515DWW89_RS07520
Partner old locus tags
DWW89_07515DWW89_07520
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117993845.1Primary protein accession used for annex mappings.
UniProt accessionA0A412RP40Primary UniProt accession resolved in the annex database.
UniProt IDA0A412RP40_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWW89_RS07520Primary locus identifier stored in the genes table.
Old locus tagDWW89_07520Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRXR01000010.1Sequence record reported by the local genomic context database.
Genomic interval11 690-13 066 nt1 377 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span11 040-13 066 ntGCF_003460385::NZ_QRXR01000010.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460385::NZ_QRXR01000010.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRXR01000010.1All displayed genes belong to this local TCS context.
Neighborhood span11 040-13 066 nt2 027 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 040 nt13 066 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWW89_RS07515GCF_003460385#DWW89_RS07515
RROmpR
11 040-11 702 nt · Forward (+)
DWW89_RS07520GCF_003460385#DWW89_RS07520
HKClassicCurrent focus
11 690-13 066 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460385#DWW89_RS07520The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1862480
Simplified PFAM architecture for HKOC_1862480
PFAM domain coverage: 166 / 458 aa (36.2%)
1 aa458 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[234-294] | HATPase_c[347-451]
- Domain count: 2
- Matched identifier: HKOC_1862480
- Positioned domains: HisKA 234-294 ; HATPase_c 347-451
Cluster members and taxonomy
Representative gene: GCF_003460385#DWW89_RS07520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003460385
AssemblyASM346038v1 · Scaffoldhaploid
Genome composition3 481 355 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 36 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key