1 Response_reg#1
3-103 aa · 101 aa · 46.3% of protein
Raw token
Response_reg:3:8.36e-26:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWW89_RS06925
Response regulator NarL family
Agathobacter rectalis · GCF_003460385
ClassRRTypeNarLLength218 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003460385#DWW89_RS06925Stable P2CS identifier used across views.
GenomeGCF_003460385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 218 aa (70.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
160-212 aa · 53 aa · 24.3% of protein
Raw token
HTH_LUXR:160:1.77e-19:212:53:58- Raw architecture: Response_reg:3:8.36e-26:103:101:111#HTH_LUXR:160:1.77e-19:212:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003460385::NZ_QRXR01000009.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10588-12473Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWW89_06925RefSeq proteinWP_117993679.1
Context group ID
GCF_003460385::NZ_QRXR01000009.1::G00056Context members
DWW89_RS06920DWW89_RS06925
Partner locus tags
DWW89_RS06920DWW89_RS06925
Partner old locus tags
DWW89_06920DWW89_06925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117993679.1Primary protein accession used for annex mappings.
UniProt accessionA0A412RPP2Primary UniProt accession resolved in the annex database.
UniProt IDA0A412RPP2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWW89_RS06925Primary locus identifier stored in the genes table.
Old locus tagDWW89_06925Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRXR01000009.1Sequence record reported by the local genomic context database.
Genomic interval11 817-12 473 nt657 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 588-12 473 ntGCF_003460385::NZ_QRXR01000009.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460385::NZ_QRXR01000009.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRXR01000009.1All displayed genes belong to this local TCS context.
Neighborhood span10 588-12 473 nt1 886 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 588 nt12 473 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWW89_RS06920GCF_003460385#DWW89_RS06920
HKClassic
10 588-11 772 nt · Forward (+)
DWW89_RS06925GCF_003460385#DWW89_RS06925
RRNarLCurrent focus
11 817-12 473 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460385#DWW89_RS06925The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1819869
Simplified PFAM architecture for RROC_1819869
PFAM domain coverage: 155 / 218 aa (71.1%)
1 aa218 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[160-212]
- Domain count: 2
- Matched identifier: RROC_1819869
- Positioned domains: Response_reg 3-104 ; Response_reg 3-104 ; GerE 160-212 ; GerE 160-212
Cluster members and taxonomy
Representative gene: GCF_003460385#DWW89_RS06925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003460385
AssemblyASM346038v1 · Scaffoldhaploid
Genome composition3 481 355 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 36 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key