1 HisKA#1
79-147 aa · 69 aa · 21.9% of protein
Raw token
HisKA:79:0.00000000000579:147:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWW89_RS04720
Histidine kinase, Classic
Agathobacter rectalis · GCF_003460385
ClassHKTypeClassicLength315 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003460385#DWW89_RS04720Stable P2CS identifier used across views.
GenomeGCF_003460385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length315 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 315 aa (60.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa315 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
194-313 aa · 120 aa · 38.1% of protein
Raw token
HATPase_c:194:0.00000000000000199:313:124:109- Raw architecture: HisKA:79:0.00000000000579:147:69:64#HATPase_c:194:0.00000000000000199:313:124:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003460385::NZ_QRXR01000006.1::G00046
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span16810-17757Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWW89_04720RefSeq proteinWP_117993274.1
Context group ID
GCF_003460385::NZ_QRXR01000006.1::G00046Context members
DWW89_RS04720
Partner locus tags
DWW89_RS04720
Partner old locus tags
DWW89_04720
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117993274.1Primary protein accession used for annex mappings.
UniProt accessionA0A415ID48Primary UniProt accession resolved in the annex database.
UniProt IDA0A415ID48_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWW89_RS04720Primary locus identifier stored in the genes table.
Old locus tagDWW89_04720Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRXR01000006.1Sequence record reported by the local genomic context database.
Genomic interval16 810-17 757 nt948 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 810-17 757 ntGCF_003460385::NZ_QRXR01000006.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460385::NZ_QRXR01000006.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRXR01000006.1All displayed genes belong to this local TCS context.
Neighborhood span16 810-17 757 nt948 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 810 nt17 757 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWW89_RS04720GCF_003460385#DWW89_RS04720
HKClassicCurrent focus
16 810-17 757 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460385#DWW89_RS04720The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2873513
Simplified PFAM architecture for HKOC_2873513
PFAM domain coverage: 173 / 315 aa (54.9%)
1 aa315 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[89-146] | HATPase_c[196-310]
- Domain count: 2
- Matched identifier: HKOC_2873513
- Positioned domains: HisKA 89-146 ; HATPase_c 196-310
Cluster members and taxonomy
Representative gene: GCF_003460385#DWW89_RS04720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003460385
AssemblyASM346038v1 · Scaffoldhaploid
Genome composition3 481 355 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 36 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key