1 Response_reg#1
6-121 aa · 116 aa · 49.4% of protein
Raw token
Response_reg:6:4.2e-19:121:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWW89_RS04000
Response regulator LytTR family
Agathobacter rectalis · GCF_003460385
ClassRRTypeLytTRLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003460385#DWW89_RS04000Stable P2CS identifier used across views.
GenomeGCF_003460385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage208 / 235 aa (88.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-228 aa · 92 aa · 39.1% of protein
Raw token
LytTR:137:4.94e-17:228:98:98- Raw architecture: Response_reg:6:4.2e-19:121:119:111#LytTR:137:4.94e-17:228:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003460385::NZ_QRXR01000005.1::G00040
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span26310-27017Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWW89_04000RefSeq proteinWP_117993203.1
Context group ID
GCF_003460385::NZ_QRXR01000005.1::G00040Context members
DWW89_RS04000
Partner locus tags
DWW89_RS04000
Partner old locus tags
DWW89_04000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117993203.1Primary protein accession used for annex mappings.
UniProt accessionA0A412RTF7Primary UniProt accession resolved in the annex database.
UniProt IDA0A412RTF7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWW89_RS04000Primary locus identifier stored in the genes table.
Old locus tagDWW89_04000Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRXR01000005.1Sequence record reported by the local genomic context database.
Genomic interval26 310-27 017 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span26 310-27 017 ntGCF_003460385::NZ_QRXR01000005.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460385::NZ_QRXR01000005.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRXR01000005.1All displayed genes belong to this local TCS context.
Neighborhood span26 310-27 017 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 310 nt27 017 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWW89_RS04000GCF_003460385#DWW89_RS04000
RRLytTRCurrent focus
26 310-27 017 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460385#DWW89_RS04000The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1024497
Simplified PFAM architecture for RROC_1024497
PFAM domain coverage: 192 / 235 aa (81.7%)
1 aa235 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-109] | LytTR[138-225]
- Domain count: 2
- Matched identifier: RROC_1024497
- Positioned domains: Response_reg 6-109 ; Response_reg 6-109 ; LytTR 138-225 ; LytTR 138-225
Cluster members and taxonomy
Representative gene: GCF_003460385#DWW89_RS04000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003460385
AssemblyASM346038v1 · Scaffoldhaploid
Genome composition3 481 355 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 36 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key