1 Response_reg#1
4-112 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:4:5.01e-30:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWW89_RS02155
Response regulator OmpR family
Agathobacter rectalis · GCF_003460385
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003460385#DWW89_RS02155Stable P2CS identifier used across views.
GenomeGCF_003460385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 223 aa (81.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-216 aa · 72 aa · 32.3% of protein
Raw token
Trans_reg_C:145:1.03e-18:216:77:77- Raw architecture: Response_reg:4:5.01e-30:112:111:111#Trans_reg_C:145:1.03e-18:216:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003460385::NZ_QRXR01000002.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span187453-189437Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWW89_02155RefSeq proteinWP_117719131.1
Context group ID
GCF_003460385::NZ_QRXR01000002.1::G00018Context members
DWW89_RS02150DWW89_RS02155
Partner locus tags
DWW89_RS02150DWW89_RS02155
Partner old locus tags
DWW89_02150DWW89_02155
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117719131.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4Y6H1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4Y6H1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWW89_RS02155Primary locus identifier stored in the genes table.
Old locus tagDWW89_02155Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRXR01000002.1Sequence record reported by the local genomic context database.
Genomic interval188 766-189 437 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span187 453-189 437 ntGCF_003460385::NZ_QRXR01000002.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460385::NZ_QRXR01000002.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRXR01000002.1All displayed genes belong to this local TCS context.
Neighborhood span187 453-189 437 nt1 985 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
187 453 nt189 437 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWW89_RS02150GCF_003460385#DWW89_RS02150
HKClassic
187 453-188 727 nt · Reverse (-)
DWW89_RS02155GCF_003460385#DWW89_RS02155
RROmpRCurrent focus
188 766-189 437 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438715#DXB99_RS12755Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1600131
Simplified PFAM architecture for RROC_1600131
PFAM domain coverage: 180 / 223 aa (80.7%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[146-216]
- Domain count: 2
- Matched identifier: RROC_1600131
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 146-216 ; Trans_reg_C 146-216
Cluster members and taxonomy
Representative gene: GCF_003438715#DXB99_RS12755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003460385
AssemblyASM346038v1 · Scaffoldhaploid
Genome composition3 481 355 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 36 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key