1 Response_reg#1
4-113 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:4:2.26e-36:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX07_RS07235
Response regulator OmpR family
Agathobacter rectalis · GCF_003460255
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003460255#DWX07_RS07235Stable P2CS identifier used across views.
GenomeGCF_003460255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:150:2.14e-31:226:77:77- Raw architecture: Response_reg:4:2.26e-36:113:111:111#Trans_reg_C:150:2.14e-31:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003460255::NZ_QRXF01000008.1::G00047
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span70947-74077Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX07_07235RefSeq proteinWP_012743710.1
Context group ID
GCF_003460255::NZ_QRXF01000008.1::G00047Context members
DWX07_RS07235DWX07_RS07240
Partner locus tags
DWX07_RS07235DWX07_RS07240
Partner old locus tags
DWX07_07235DWX07_07240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012743710.1Primary protein accession used for annex mappings.
UniProt accessionC4ZI46Primary UniProt accession resolved in the annex database.
UniProt IDC4ZI46_AGARVDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX07_RS07235Primary locus identifier stored in the genes table.
Old locus tagDWX07_07235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRXF01000008.1Sequence record reported by the local genomic context database.
Genomic interval70 947-71 636 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span70 947-74 077 ntGCF_003460255::NZ_QRXF01000008.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460255::NZ_QRXF01000008.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRXF01000008.1All displayed genes belong to this local TCS context.
Neighborhood span70 947-74 077 nt3 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 947 nt74 077 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX07_RS07235GCF_003460255#DWX07_RS07235
RROmpRCurrent focus
70 947-71 636 nt · Forward (+)
DWX07_RS07240GCF_003460255#DWX07_RS07240
HKClassic
71 654-74 077 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS13280Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1246430
Simplified PFAM architecture for RROC_1246430
PFAM domain coverage: 186 / 229 aa (81.2%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[150-225]
- Domain count: 2
- Matched identifier: RROC_1246430
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 150-225 ; Trans_reg_C 150-225
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS13280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003460255
AssemblyASM346025v1 · Scaffoldhaploid
Genome composition3 395 064 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 85 · HK 36 · RR 47CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key