1 Response_reg#1
4-117 aa · 114 aa · 21.5% of protein
Raw token
Response_reg:4:9.27e-30:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY32_RS02100
Response regulator, unclassified
Agathobacter rectalis · GCF_003458515
ClassRRTypeunclassifiedLength531 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003458515#DWY32_RS02100Stable P2CS identifier used across views.
GenomeGCF_003458515Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length531 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 531 aa (36.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa531 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
434-475 aa · 42 aa · 7.9% of protein
Raw token
HTH_AraC:434:0.00000012:475:42:423 HTH_AraC#3
489-525 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:489:0.0000401:525:37:42- Raw architecture: Response_reg:4:9.27e-30:117:114:111#HTH_AraC:434:0.00000012:475:42:42#HTH_AraC:489:0.0000401:525:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003458515::NZ_QRUL01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span467043-470416Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY32_02100RefSeq proteinWP_117918585.1
Context group ID
GCF_003458515::NZ_QRUL01000001.1::G00003Context members
DWY32_RS02100DWY32_RS02105
Partner locus tags
DWY32_RS02100DWY32_RS02105
Partner old locus tags
DWY32_02100DWY32_02105
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117918585.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY32_RS02100Primary locus identifier stored in the genes table.
Old locus tagDWY32_02100Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRUL01000001.1Sequence record reported by the local genomic context database.
Genomic interval467 043-468 638 nt1 596 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span467 043-470 416 ntGCF_003458515::NZ_QRUL01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003458515::NZ_QRUL01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRUL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span467 043-470 416 nt3 374 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
467 043 nt470 416 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY32_RS02100GCF_003458515#DWY32_RS02100
RRunclassifiedCurrent focus
467 043-468 638 nt · Reverse (-)
DWY32_RS02105GCF_003458515#DWY32_RS02105
HKClassic
468 650-470 416 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003458515#DWY32_RS02100The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0110018
Simplified PFAM architecture for RROC_0110018
PFAM domain coverage: 193 / 531 aa (36.3%)
1 aa531 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-117] | HTH_18[448-526]
- Domain count: 2
- Matched identifier: RROC_0110018
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; HTH_18 448-526 ; HTH_18 448-526
Cluster members and taxonomy
Representative gene: GCF_003458515#DWY32_RS02100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003458515
AssemblyASM345851v1 · Scaffoldhaploid
Genome composition3 217 393 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 73 · HK 33 · RR 39CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key