1 Response_reg#1
6-115 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:6:3.49e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY94_RS00530
Response regulator OmpR family
Thomasclavelia ramosa · GCF_003457945
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003457945#DWY94_RS00530Stable P2CS identifier used across views.
GenomeGCF_003457945Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 232 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:152:3.02e-26:228:77:77- Raw architecture: Response_reg:6:3.49e-35:115:111:111#Trans_reg_C:152:3.02e-26:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003457945::NZ_QRTG01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span114135-116745Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY94_00530RefSeq proteinWP_003536534.1
Context group ID
GCF_003457945::NZ_QRTG01000001.1::G00001Context members
DWY94_RS00525DWY94_RS00530
Partner locus tags
DWY94_RS00525DWY94_RS00530
Partner old locus tags
DWY94_00525DWY94_00530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003536534.1Primary protein accession used for annex mappings.
UniProt accessionB0N469Primary UniProt accession resolved in the annex database.
UniProt IDB0N469_9FIRMDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY94_RS00530Primary locus identifier stored in the genes table.
Old locus tagDWY94_00530Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRTG01000001.1Sequence record reported by the local genomic context database.
Genomic interval116 047-116 745 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span114 135-116 745 ntGCF_003457945::NZ_QRTG01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003457945::NZ_QRTG01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRTG01000001.1All displayed genes belong to this local TCS context.
Neighborhood span114 135-116 745 nt2 611 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
114 135 nt116 745 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY94_RS00525GCF_003457945#DWY94_RS00525
HKClassic
114 135-116 054 nt · Forward (+)
DWY94_RS00530GCF_003457945#DWY94_RS00530
RROmpRCurrent focus
116 047-116 745 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS05975Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1119698
Simplified PFAM architecture for RROC_1119698
PFAM domain coverage: 185 / 232 aa (79.7%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_1119698
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 153-228 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS05975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003457945
AssemblyASM345794v1 · Scaffoldhaploid
Genome composition3 799 075 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 56 · HK 26 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key