1 HisKA#1
202-262 aa · 61 aa · 14.6% of protein
Raw token
HisKA:202:0.00000000000535:262:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ12_RS03055
Histidine kinase, Classic
Blautia obeum · GCF_003457595
ClassHKTypeClassicLength419 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003457595#DWZ12_RS03055Stable P2CS identifier used across views.
GenomeGCF_003457595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length419 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 419 aa (40.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
311-419 aa · 109 aa · 26.0% of protein
Raw token
HATPase_c:311:1.24e-30:419:109:109- Raw architecture: HisKA:202:0.00000000000535:262:61:64#HATPase_c:311:1.24e-30:419:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003457595::NZ_QRSS01000003.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30857-32778Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ12_03060RefSeq proteinWP_055056682.1
Context group ID
GCF_003457595::NZ_QRSS01000003.1::G00029Context members
DWZ12_RS03050DWZ12_RS03055
Partner locus tags
DWZ12_RS03050DWZ12_RS03055
Partner old locus tags
DWZ12_03055DWZ12_03060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055056682.1Primary protein accession used for annex mappings.
UniProt accessionA0A174RWR9Primary UniProt accession resolved in the annex database.
UniProt IDA0A174RWR9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ12_RS03055Primary locus identifier stored in the genes table.
Old locus tagDWZ12_03060Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRSS01000003.1Sequence record reported by the local genomic context database.
Genomic interval31 519-32 778 nt1 260 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span30 857-32 778 ntGCF_003457595::NZ_QRSS01000003.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003457595::NZ_QRSS01000003.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRSS01000003.1All displayed genes belong to this local TCS context.
Neighborhood span30 857-32 778 nt1 922 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 857 nt32 778 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ12_RS03050GCF_003457595#DWZ12_RS03050
RROmpR
30 857-31 516 nt · Forward (+)
DWZ12_RS03055GCF_003457595#DWZ12_RS03055
HKClassicCurrent focus
31 519-32 778 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405215#ARA06_RS14040Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2276829
Simplified PFAM architecture for HKOC_2276829
PFAM domain coverage: 165 / 419 aa (39.4%)
1 aa419 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[204-262] | HATPase_c[312-417]
- Domain count: 2
- Matched identifier: HKOC_2276829
- Positioned domains: HisKA 204-262 ; HATPase_c 312-417
Cluster members and taxonomy
Representative gene: GCF_001405215#ARA06_RS14040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003457595
AssemblyASM345759v1 · Scaffoldhaploid
Genome composition3 533 904 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 89 · HK 49 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key