1 Response_reg#1
6-112 aa · 107 aa · 45.3% of protein
Raw token
Response_reg:6:6e-19:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF102978_RS18660
Response regulator LytTR family
Clostridioides difficile · GCF_003457035
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003457035#CDIF102978_RS18660Stable P2CS identifier used across views.
GenomeGCF_003457035Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 236 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-227 aa · 87 aa · 36.9% of protein
Raw token
LytTR:141:1.18e-18:227:93:98- Raw architecture: Response_reg:6:6e-19:112:110:111#LytTR:141:1.18e-18:227:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003457035::NZ_CP020380.1::G00053
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3905949-3906659Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF102978_03783RefSeq proteinWP_021376573.1
Context group ID
GCF_003457035::NZ_CP020380.1::G00053Context members
CDIF102978_RS18660
Partner locus tags
CDIF102978_RS18660
Partner old locus tags
CDIF102978_03783
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021376573.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF102978_RS18660Primary locus identifier stored in the genes table.
Old locus tagCDIF102978_03783Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP020380.1Sequence record reported by the local genomic context database.
Genomic interval3 905 949-3 906 659 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 905 949-3 906 659 ntGCF_003457035::NZ_CP020380.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003457035::NZ_CP020380.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP020380.1All displayed genes belong to this local TCS context.
Neighborhood span3 905 949-3 906 659 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 905 949 nt3 906 659 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDIF102978_RS18660GCF_003457035#CDIF102978_RS18660
RRLytTRCurrent focus
3 905 949-3 906 659 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449185#QCW_RS16775Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0989902
Simplified PFAM architecture for RROC_0989902
PFAM domain coverage: 197 / 236 aa (83.5%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-116] | LytTR[141-226]
- Domain count: 2
- Matched identifier: RROC_0989902
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; LytTR 141-226 ; LytTR 141-226
Cluster members and taxonomy
Representative gene: GCF_000449185#QCW_RS16775
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 37 over 37 total members. Page 1 / 1.
GCF_000449185#QCW_RS16775 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003457035
AssemblyASM345703v1 · Complete Genomehaploid
Genome composition4 253 783 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 43 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key