1 His_kinase#1
305-376 aa · 72 aa · 14.4% of protein
Raw token
His_kinase:305:7.25e-25:376:72:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF102978_RS16265
Histidine kinase, Classic
Clostridioides difficile · GCF_003457035
ClassHKTypeClassicLength501 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003457035#CDIF102978_RS16265Stable P2CS identifier used across views.
GenomeGCF_003457035Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length501 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 501 aa (34.5%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa501 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
396-496 aa · 101 aa · 20.2% of protein
Raw token
HATPase_c:396:0.000000659:496:107:109- Raw architecture: His_kinase:305:7.25e-25:376:72:80#HATPase_c:396:0.000000659:496:107:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003457035::NZ_CP020380.1::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3370423-3372740Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF102978_03282RefSeq proteinWP_065986536.1
Context group ID
GCF_003457035::NZ_CP020380.1::G00044Context members
CDIF102978_RS16260CDIF102978_RS16265
Partner locus tags
CDIF102978_RS16260CDIF102978_RS16265
Partner old locus tags
CDIF102978_03281CDIF102978_03282
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_065986536.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF102978_RS16265Primary locus identifier stored in the genes table.
Old locus tagCDIF102978_03282Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP020380.1Sequence record reported by the local genomic context database.
Genomic interval3 371 235-3 372 740 nt1 506 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 370 423-3 372 740 ntGCF_003457035::NZ_CP020380.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003457035::NZ_CP020380.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP020380.1All displayed genes belong to this local TCS context.
Neighborhood span3 370 423-3 372 740 nt2 318 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 370 423 nt3 372 740 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDIF102978_RS16260GCF_003457035#CDIF102978_RS16260
RRunclassified
3 370 423-3 371 121 nt · Reverse (-)
CDIF102978_RS16265GCF_003457035#CDIF102978_RS16265
HKClassicCurrent focus
3 371 235-3 372 740 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003456975#CDIF102859_RS16160Use this link to inspect the representative gene detail.
PFAM architectureCupin_2 + His_kinase2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1469966
Simplified PFAM architecture for HKOC_1469966
PFAM domain coverage: 137 / 501 aa (27.3%)
1 aa501 aa
Cupin_2His_kinase
- Simplified architecture: Cupin_2 + His_kinase
- Raw architecture: Cupin_2[34-96] | His_kinase[303-376]
- Domain count: 2
- Matched identifier: HKOC_1469966
- Positioned domains: Cupin_2 34-96 ; His_kinase 303-376
Cluster members and taxonomy
Representative gene: GCF_003456975#CDIF102859_RS16160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003457035
AssemblyASM345703v1 · Complete Genomehaploid
Genome composition4 253 783 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 43 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key