1 Response_reg#1
3-111 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:3:5.11e-35:111:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF102859_RS09615
Response regulator OmpR family
Clostridioides difficile · GCF_003456975
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003456975#CDIF102859_RS09615Stable P2CS identifier used across views.
GenomeGCF_003456975Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 223 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-220 aa · 75 aa · 33.6% of protein
Raw token
Trans_reg_C:146:5.98e-24:220:76:77- Raw architecture: Response_reg:3:5.11e-35:111:110:111#Trans_reg_C:146:5.98e-24:220:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003456975::NZ_CP020378.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1960371-1962264Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF102859_01934RefSeq proteinWP_009889581.1
Context group ID
GCF_003456975::NZ_CP020378.1::G00024Context members
CDIF102859_RS09615CDIF102859_RS09620
Partner locus tags
CDIF102859_RS09615CDIF102859_RS09620
Partner old locus tags
CDIF102859_01934CDIF102859_01935
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009889581.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N3D2Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N3D2_CLODCDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF102859_RS09615Primary locus identifier stored in the genes table.
Old locus tagCDIF102859_01934Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP020378.1Sequence record reported by the local genomic context database.
Genomic interval1 960 371-1 961 042 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 960 371-1 962 264 ntGCF_003456975::NZ_CP020378.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003456975::NZ_CP020378.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP020378.1All displayed genes belong to this local TCS context.
Neighborhood span1 960 371-1 962 264 nt1 894 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 960 371 nt1 962 264 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDIF102859_RS09615GCF_003456975#CDIF102859_RS09615
RROmpRCurrent focus
1 960 371-1 961 042 nt · Forward (+)
CDIF102859_RS09620GCF_003456975#CDIF102859_RS09620
HKClassic
1 961 032-1 962 264 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0208730Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1586787
Simplified PFAM architecture for RROC_1586787
PFAM domain coverage: 184 / 223 aa (82.5%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1586787
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 146-220 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0208730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003456975
AssemblyASM345697v1 · Complete Genomehaploid
Genome composition4 247 015 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 43 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key