1 HisKA#1
264-329 aa · 66 aa · 10.1% of protein
Raw token
HisKA:264:4.5e-17:329:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB16_RS09215
Histidine kinase, Hybrid
Dorea longicatena · GCF_003439785
ClassHKTypeHybridLength656 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003439785#DXB16_RS09215Stable P2CS identifier used across views.
GenomeGCF_003439785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length656 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage305 / 656 aa (46.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa656 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
376-494 aa · 119 aa · 18.1% of protein
Raw token
HATPase_c:376:2.31e-29:494:119:1093 Response_reg#3
517-636 aa · 120 aa · 18.3% of protein
Raw token
Response_reg:517:1.76e-31:636:120:111- Raw architecture: HisKA:264:4.5e-17:329:66:64#HATPase_c:376:2.31e-29:494:119:109#Response_reg:517:1.76e-31:636:120:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003439785::NZ_QSVN01000009.1::G00042
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span41890-43860Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB16_09210RefSeq proteinWP_081021038.1
Context group ID
GCF_003439785::NZ_QSVN01000009.1::G00042Context members
DXB16_RS09215
Partner locus tags
DXB16_RS09215
Partner old locus tags
DXB16_09210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_081021038.1Primary protein accession used for annex mappings.
UniProt accessionA0A174QFJ0Primary UniProt accession resolved in the annex database.
UniProt IDA0A174QFJ0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB16_RS09215Primary locus identifier stored in the genes table.
Old locus tagDXB16_09210Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSVN01000009.1Sequence record reported by the local genomic context database.
Genomic interval41 890-43 860 nt1 971 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 890-43 860 ntGCF_003439785::NZ_QSVN01000009.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003439785::NZ_QSVN01000009.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSVN01000009.1All displayed genes belong to this local TCS context.
Neighborhood span41 890-43 860 nt1 971 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 890 nt43 860 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB16_RS09215GCF_003439785#DXB16_RS09215
HKHybridCurrent focus
41 890-43 860 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404875#ARA07_RS08390Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0881361
Simplified PFAM architecture for HKOC_0881361
PFAM domain coverage: 303 / 656 aa (46.2%)
1 aa656 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[264-329] | HATPase_c[377-494] | Response_reg[517-635]
- Domain count: 3
- Matched identifier: HKOC_0881361
- Positioned domains: HisKA 264-329 ; HATPase_c 377-494 ; Response_reg 517-635
Cluster members and taxonomy
Representative gene: GCF_001404875#ARA07_RS08390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_003439785
AssemblyASM343978v1 · Scaffoldhaploid
Genome composition3 143 729 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 83 · HK 42 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key