1 HAMP#1
89-159 aa · 71 aa · 18.4% of protein
Raw token
HAMP:89:0.00000000000456:159:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB16_RS03420
Histidine kinase, Classic
Dorea longicatena · GCF_003439785
ClassHKTypeClassicLength386 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003439785#DXB16_RS03420Stable P2CS identifier used across views.
GenomeGCF_003439785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length386 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 386 aa (64.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa386 aa
Domain-by-domain annotation3 items
2 HisKA#2
164-230 aa · 67 aa · 17.4% of protein
Raw token
HisKA:164:0.0000000000624:230:67:643 HATPase_c#3
272-381 aa · 110 aa · 28.5% of protein
Raw token
HATPase_c:272:5.05e-32:381:110:109- Raw architecture: HAMP:89:0.00000000000456:159:71:69#HisKA:164:0.0000000000624:230:67:64#HATPase_c:272:5.05e-32:381:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003439785::NZ_QSVN01000002.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span289370-291213Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB16_03420RefSeq proteinWP_117597465.1
Context group ID
GCF_003439785::NZ_QSVN01000002.1::G00021Context members
DXB16_RS03415DXB16_RS03420
Partner locus tags
DXB16_RS03415DXB16_RS03420
Partner old locus tags
DXB16_03415DXB16_03420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117597465.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5GJF6Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5GJF6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB16_RS03420Primary locus identifier stored in the genes table.
Old locus tagDXB16_03420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSVN01000002.1Sequence record reported by the local genomic context database.
Genomic interval290 053-291 213 nt1 161 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span289 370-291 213 ntGCF_003439785::NZ_QSVN01000002.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003439785::NZ_QSVN01000002.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSVN01000002.1All displayed genes belong to this local TCS context.
Neighborhood span289 370-291 213 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
289 370 nt291 213 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB16_RS03415GCF_003439785#DXB16_RS03415
RROmpR
289 370-290 053 nt · Forward (+)
DXB16_RS03420GCF_003439785#DXB16_RS03420
HKClassicCurrent focus
290 053-291 213 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003439785#DXB16_RS03420The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2559075
Simplified PFAM architecture for HKOC_2559075
PFAM domain coverage: 227 / 386 aa (58.8%)
1 aa386 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[106-158] | HisKA[164-229] | HATPase_c[275-382]
- Domain count: 3
- Matched identifier: HKOC_2559075
- Positioned domains: HAMP 106-158 ; HisKA 164-229 ; HATPase_c 275-382
Cluster members and taxonomy
Representative gene: GCF_003439785#DXB16_RS03420
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_003439785
AssemblyASM343978v1 · Scaffoldhaploid
Genome composition3 143 729 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 83 · HK 42 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key