1 Response_reg#1
6-115 aa · 110 aa · 48.5% of protein
Raw token
Response_reg:6:1.68e-39:115:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB16_RS03415
Response regulator OmpR family
Dorea longicatena · GCF_003439785
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003439785#DXB16_RS03415Stable P2CS identifier used across views.
GenomeGCF_003439785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 227 aa (81.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-222 aa · 75 aa · 33.0% of protein
Raw token
Trans_reg_C:148:1.2e-20:222:76:77- Raw architecture: Response_reg:6:1.68e-39:115:110:111#Trans_reg_C:148:1.2e-20:222:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003439785::NZ_QSVN01000002.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span289370-291213Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB16_03415RefSeq proteinWP_006426539.1
Context group ID
GCF_003439785::NZ_QSVN01000002.1::G00021Context members
DXB16_RS03415DXB16_RS03420
Partner locus tags
DXB16_RS03415DXB16_RS03420
Partner old locus tags
DXB16_03415DXB16_03420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006426539.1Primary protein accession used for annex mappings.
UniProt accessionA6BE00Primary UniProt accession resolved in the annex database.
UniProt IDA6BE00_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB16_RS03415Primary locus identifier stored in the genes table.
Old locus tagDXB16_03415Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSVN01000002.1Sequence record reported by the local genomic context database.
Genomic interval289 370-290 053 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span289 370-291 213 ntGCF_003439785::NZ_QSVN01000002.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003439785::NZ_QSVN01000002.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSVN01000002.1All displayed genes belong to this local TCS context.
Neighborhood span289 370-291 213 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
289 370 nt291 213 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB16_RS03415GCF_003439785#DXB16_RS03415
RROmpRCurrent focus
289 370-290 053 nt · Forward (+)
DXB16_RS03420GCF_003439785#DXB16_RS03420
HKClassic
290 053-291 213 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154065#DORLON_RS02320Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1354469
Simplified PFAM architecture for RROC_1354469
PFAM domain coverage: 184 / 227 aa (81.1%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1354469
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_000154065#DORLON_RS02320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_003439785
AssemblyASM343978v1 · Scaffoldhaploid
Genome composition3 143 729 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 83 · HK 42 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key