1 HisKA#1
207-271 aa · 65 aa · 15.3% of protein
Raw token
HisKA:207:0.00000000000000235:271:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB16_RS01160
Histidine kinase, Classic
Dorea longicatena · GCF_003439785
ClassHKTypeClassicLength426 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003439785#DXB16_RS01160Stable P2CS identifier used across views.
GenomeGCF_003439785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length426 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 426 aa (37.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa426 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
318-413 aa · 96 aa · 22.5% of protein
Raw token
HATPase_c:318:0.00000000000101:413:97:109- Raw architecture: HisKA:207:0.00000000000000235:271:65:64#HATPase_c:318:0.00000000000101:413:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003439785::NZ_QSVN01000001.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span252055-254020Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB16_01160RefSeq proteinWP_117597041.1
Context group ID
GCF_003439785::NZ_QSVN01000001.1::G00007Context members
DXB16_RS01155DXB16_RS01160
Partner locus tags
DXB16_RS01155DXB16_RS01160
Partner old locus tags
DXB16_01155DXB16_01160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117597041.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5GJH2Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5GJH2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB16_RS01160Primary locus identifier stored in the genes table.
Old locus tagDXB16_01160Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSVN01000001.1Sequence record reported by the local genomic context database.
Genomic interval252 740-254 020 nt1 281 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span252 055-254 020 ntGCF_003439785::NZ_QSVN01000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003439785::NZ_QSVN01000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSVN01000001.1All displayed genes belong to this local TCS context.
Neighborhood span252 055-254 020 nt1 966 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
252 055 nt254 020 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB16_RS01155GCF_003439785#DXB16_RS01155
RROmpR
252 055-252 777 nt · Forward (+)
DXB16_RS01160GCF_003439785#DXB16_RS01160
HKClassicCurrent focus
252 740-254 020 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003439785#DXB16_RS01160The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2209469
Simplified PFAM architecture for HKOC_2209469
PFAM domain coverage: 159 / 426 aa (37.3%)
1 aa426 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[208-271] | HATPase_c[319-413]
- Domain count: 2
- Matched identifier: HKOC_2209469
- Positioned domains: HisKA 208-271 ; HATPase_c 319-413
Cluster members and taxonomy
Representative gene: GCF_003439785#DXB16_RS01160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_003439785
AssemblyASM343978v1 · Scaffoldhaploid
Genome composition3 143 729 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 83 · HK 42 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key