1 Response_reg#1
52-112 aa · 61 aa · 46.2% of protein
Raw token
Response_reg:52:0.000000106:112:66:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB16_RS00545
Response regulator, CheY family
Dorea longicatena · GCF_003439785
ClassRRTypeCheYLength132 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003439785#DXB16_RS00545Stable P2CS identifier used across views.
GenomeGCF_003439785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length132 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage61 / 132 aa (46.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa132 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:52:0.000000106:112:66:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003439785::NZ_QSVN01000001.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span125242-125640Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB16_00545RefSeq proteinWP_117596879.1
Context group ID
GCF_003439785::NZ_QSVN01000001.1::G00005Context members
DXB16_RS00545
Partner locus tags
DXB16_RS00545
Partner old locus tags
DXB16_00545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117596879.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5GJ60Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5GJ60_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB16_RS00545Primary locus identifier stored in the genes table.
Old locus tagDXB16_00545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSVN01000001.1Sequence record reported by the local genomic context database.
Genomic interval125 242-125 640 nt399 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span125 242-125 640 ntGCF_003439785::NZ_QSVN01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003439785::NZ_QSVN01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSVN01000001.1All displayed genes belong to this local TCS context.
Neighborhood span125 242-125 640 nt399 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
125 242 nt125 640 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB16_RS00545GCF_003439785#DXB16_RS00545
RRCheYCurrent focus
125 242-125 640 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003439785#DXB16_RS00545The current gene is the representative for this cluster.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_2309462
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_003439785#DXB16_RS00545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_003439785
AssemblyASM343978v1 · Scaffoldhaploid
Genome composition3 143 729 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 83 · HK 42 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key