1 Response_reg#1
3-112 aa · 110 aa · 46.2% of protein
Raw token
Response_reg:3:2.39e-16:112:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB16_RS00540
Response regulator LytTR family
Dorea longicatena · GCF_003439785
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003439785#DXB16_RS00540Stable P2CS identifier used across views.
GenomeGCF_003439785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage202 / 238 aa (84.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-230 aa · 92 aa · 38.7% of protein
Raw token
LytTR:139:0.0000000000000309:230:97:98- Raw architecture: Response_reg:3:2.39e-16:112:112:111#LytTR:139:0.0000000000000309:230:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003439785::NZ_QSVN01000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span124263-124979Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB16_00540RefSeq proteinWP_117596877.1
Context group ID
GCF_003439785::NZ_QSVN01000001.1::G00004Context members
DXB16_RS00540
Partner locus tags
DXB16_RS00540
Partner old locus tags
DXB16_00540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117596877.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5GJ51Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5GJ51_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB16_RS00540Primary locus identifier stored in the genes table.
Old locus tagDXB16_00540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSVN01000001.1Sequence record reported by the local genomic context database.
Genomic interval124 263-124 979 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span124 263-124 979 ntGCF_003439785::NZ_QSVN01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003439785::NZ_QSVN01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSVN01000001.1All displayed genes belong to this local TCS context.
Neighborhood span124 263-124 979 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
124 263 nt124 979 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB16_RS00540GCF_003439785#DXB16_RS00540
RRLytTRCurrent focus
124 263-124 979 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003439785#DXB16_RS00540The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0940378
Simplified PFAM architecture for RROC_0940378
PFAM domain coverage: 202 / 238 aa (84.9%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-114] | LytTR[139-228]
- Domain count: 2
- Matched identifier: RROC_0940378
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; LytTR 139-228 ; LytTR 139-228
Cluster members and taxonomy
Representative gene: GCF_003439785#DXB16_RS00540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_003439785
AssemblyASM343978v1 · Scaffoldhaploid
Genome composition3 143 729 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 83 · HK 42 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key