1 CHASE#1
110-198 aa · 89 aa · 13.0% of protein
Raw token
CHASE:110:1.32e-16:198:98:183P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB16_RS00095
Histidine kinase, Hybrid
Dorea longicatena · GCF_003439785
ClassHKTypeHybridLength686 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_003439785#DXB16_RS00095Stable P2CS identifier used across views.
GenomeGCF_003439785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
CHASEHisKAHATPase_cResponse_reg
Protein length686 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage392 / 686 aa (57.1%)Merged over positioned domains only.
Domain description1 CHASE,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa686 aa
Domain-by-domain annotation4 items
2 HisKA#2
309-375 aa · 67 aa · 9.8% of protein
Raw token
HisKA:309:5.83e-18:375:67:643 HATPase_c#3
422-539 aa · 118 aa · 17.2% of protein
Raw token
HATPase_c:422:2.59e-28:539:118:1094 Response_reg#4
565-682 aa · 118 aa · 17.2% of protein
Raw token
Response_reg:565:2.29e-30:682:118:111- Raw architecture: CHASE:110:1.32e-16:198:98:183#HisKA:309:5.83e-18:375:67:64#HATPase_c:422:2.59e-28:539:118:109#Response_reg:565:2.29e-30:682:118:111
- Domain description: 1 CHASE,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_003439785::NZ_QSVN01000001.1::G00001
Group size55 locus tags listed below.
HK / RR3 / 2Counts resolved for the local TCS neighborhood.
Context span26352-36488Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB16_00095RefSeq proteinWP_117596768.1
Context group ID
GCF_003439785::NZ_QSVN01000001.1::G00001Context members
DXB16_RS00080DXB16_RS15555DXB16_RS00090DXB16_RS00095DXB16_RS00105
Partner locus tags
DXB16_RS00080DXB16_RS15555DXB16_RS00090DXB16_RS00095DXB16_RS00105
Partner old locus tags
DXB16_00080DXB16_00085DXB16_00090DXB16_00095DXB16_00105
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117596768.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5GJK3Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5GJK3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB16_RS00095Primary locus identifier stored in the genes table.
Old locus tagDXB16_00095Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSVN01000001.1Sequence record reported by the local genomic context database.
Genomic interval32 715-34 775 nt2 061 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span26 352-36 488 ntGCF_003439785::NZ_QSVN01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003439785::NZ_QSVN01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSVN01000001.1All displayed genes belong to this local TCS context.
Neighborhood span26 352-36 488 nt10 137 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 352 nt36 488 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
DXB16_RS00080GCF_003439785#DXB16_RS00080
HKHybrid
26 352-29 219 nt · Forward (+)
DXB16_RS15555GCF_003439785#DXB16_RS15555
RRCheY
29 290-29 625 nt · Forward (+)
DXB16_RS00090GCF_003439785#DXB16_RS00090
HKHybrid
29 706-32 684 nt · Forward (+)
DXB16_RS00095GCF_003439785#DXB16_RS00095
HKHybridCurrent focus
32 715-34 775 nt · Forward (+)
DXB16_RS00105GCF_003439785#DXB16_RS00105
RRRpfG
34 989-36 488 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003439785#DXB16_RS00095The current gene is the representative for this cluster.
PFAM architectureCHASE + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0801523
Simplified PFAM architecture for HKOC_0801523
PFAM domain coverage: 389 / 686 aa (56.7%)
1 aa686 aa
CHASEHisKAHATPase_cResponse_reg
- Simplified architecture: CHASE + HisKA + HATPase_c + Response_reg
- Raw architecture: CHASE[109-197] | HisKA[309-375] | HATPase_c[422-537] | Response_reg[565-681]
- Domain count: 4
- Matched identifier: HKOC_0801523
- Positioned domains: CHASE 109-197 ; HisKA 309-375 ; HATPase_c 422-537 ; Response_reg 565-681
Cluster members and taxonomy
Representative gene: GCF_003439785#DXB16_RS00095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_003439785
AssemblyASM343978v1 · Scaffoldhaploid
Genome composition3 143 729 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 83 · HK 42 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key