1 HisKA_3#1
216-280 aa · 65 aa · 14.5% of protein
Raw token
HisKA_3:216:0.0000000000000743:280:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA79_RS05975
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_003439655
ClassHKTypeClassicLength449 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003439655#DXA79_RS05975Stable P2CS identifier used across views.
GenomeGCF_003439655Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length449 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 449 aa (39.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa449 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
326-435 aa · 110 aa · 24.5% of protein
Raw token
HATPase_c:326:0.0000000341:435:112:109- Raw architecture: HisKA_3:216:0.0000000000000743:280:65:68#HATPase_c:326:0.0000000341:435:112:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003439655::NZ_QSWD01000003.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span235892-237900Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA79_05975RefSeq proteinWP_117612158.1
Context group ID
GCF_003439655::NZ_QSWD01000003.1::G00010Context members
DXA79_RS05970DXA79_RS05975
Partner locus tags
DXA79_RS05970DXA79_RS05975
Partner old locus tags
DXA79_05970DXA79_05975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117612158.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5HM41Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5HM41_BIFPSDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA79_RS05975Primary locus identifier stored in the genes table.
Old locus tagDXA79_05975Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSWD01000003.1Sequence record reported by the local genomic context database.
Genomic interval236 551-237 900 nt1 350 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span235 892-237 900 ntGCF_003439655::NZ_QSWD01000003.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003439655::NZ_QSWD01000003.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSWD01000003.1All displayed genes belong to this local TCS context.
Neighborhood span235 892-237 900 nt2 009 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
235 892 nt237 900 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA79_RS05970GCF_003439655#DXA79_RS05970
RRNarL
235 892-236 551 nt · Reverse (-)
DXA79_RS05975GCF_003439655#DXA79_RS05975
HKClassicCurrent focus
236 551-237 900 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003439655#DXA79_RS05975The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1977137
Simplified PFAM architecture for HKOC_1977137
PFAM domain coverage: 66 / 449 aa (14.7%)
1 aa449 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[216-281]
- Domain count: 1
- Matched identifier: HKOC_1977137
- Positioned domains: HisKA_3 216-281
Cluster members and taxonomy
Representative gene: GCF_003439655#DXA79_RS05975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_003439655
AssemblyASM343965v1 · Scaffoldhaploid
Genome composition2 369 746 bp · 57,0% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 27 · HK 10 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key