1 HisKA_3#1
141-206 aa · 66 aa · 19.0% of protein
Raw token
HisKA_3:141:6.95e-17:206:66:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB99_RS16530
Histidine kinase, Classic
Agathobacter rectalis · GCF_003438715
ClassHKTypeClassicLength347 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438715#DXB99_RS16530Stable P2CS identifier used across views.
GenomeGCF_003438715Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length347 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 347 aa (47.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa347 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
247-343 aa · 97 aa · 28.0% of protein
Raw token
HATPase_c:247:2.11e-21:343:106:109- Raw architecture: HisKA_3:141:6.95e-17:206:66:68#HATPase_c:247:2.11e-21:343:106:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438715::NZ_QSTP01000026.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span31029-32720Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB99_16530RefSeq proteinWP_117686657.1
Context group ID
GCF_003438715::NZ_QSTP01000026.1::G00027Context members
DXB99_RS16525DXB99_RS16530
Partner locus tags
DXB99_RS16525DXB99_RS16530
Partner old locus tags
DXB99_16525DXB99_16530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117686657.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4LS78Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4LS78_9FIRMDisplay identifier provided by UniProt.
GO / PubMed7 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB99_RS16530Primary locus identifier stored in the genes table.
Old locus tagDXB99_16530Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSTP01000026.1Sequence record reported by the local genomic context database.
Genomic interval31 677-32 720 nt1 044 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span31 029-32 720 ntGCF_003438715::NZ_QSTP01000026.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438715::NZ_QSTP01000026.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSTP01000026.1All displayed genes belong to this local TCS context.
Neighborhood span31 029-32 720 nt1 692 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 029 nt32 720 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB99_RS16525GCF_003438715#DXB99_RS16525
RRNarL
31 029-31 673 nt · Reverse (-)
DXB99_RS16530GCF_003438715#DXB99_RS16530
HKClassicCurrent focus
31 677-32 720 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436785#DXD13_RS13755Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2811495
Simplified PFAM architecture for HKOC_2811495
PFAM domain coverage: 162 / 347 aa (46.7%)
1 aa347 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[141-206] | HATPase_c[249-344]
- Domain count: 2
- Matched identifier: HKOC_2811495
- Positioned domains: HisKA_3 141-206 ; HATPase_c 249-344
Cluster members and taxonomy
Representative gene: GCF_003436785#DXD13_RS13755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438715
AssemblyASM343871v1 · Scaffoldhaploid
Genome composition3 808 347 bp · 40,0% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 39 · RR 50CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key