1 Response_reg#1
3-115 aa · 113 aa · 49.6% of protein
Raw token
Response_reg:3:3.44e-28:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB99_RS15195
Response regulator OmpR family
Agathobacter rectalis · GCF_003438715
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438715#DXB99_RS15195Stable P2CS identifier used across views.
GenomeGCF_003438715Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 228 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-223 aa · 75 aa · 32.9% of protein
Raw token
Trans_reg_C:149:3.96e-19:223:76:77- Raw architecture: Response_reg:3:3.44e-28:115:113:111#Trans_reg_C:149:3.96e-19:223:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438715::NZ_QSTP01000022.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5744-7716Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB99_15195RefSeq proteinWP_025489606.1
Context group ID
GCF_003438715::NZ_QSTP01000022.1::G00023Context members
DXB99_RS15190DXB99_RS15195
Partner locus tags
DXB99_RS15190DXB99_RS15195
Partner old locus tags
DXB99_15190DXB99_15195
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025489606.1Primary protein accession used for annex mappings.
UniProt accessionA0A7G9GSI7Primary UniProt accession resolved in the annex database.
UniProt IDA0A7G9GSI7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB99_RS15195Primary locus identifier stored in the genes table.
Old locus tagDXB99_15195Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSTP01000022.1Sequence record reported by the local genomic context database.
Genomic interval7 030-7 716 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 744-7 716 ntGCF_003438715::NZ_QSTP01000022.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438715::NZ_QSTP01000022.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSTP01000022.1All displayed genes belong to this local TCS context.
Neighborhood span5 744-7 716 nt1 973 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 744 nt7 716 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB99_RS15190GCF_003438715#DXB99_RS15190
HKClassic
5 744-7 036 nt · Reverse (-)
DXB99_RS15195GCF_003438715#DXB99_RS15195
RROmpRCurrent focus
7 030-7 716 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002940845#AWN79_RS18335Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1313334
Simplified PFAM architecture for RROC_1313334
PFAM domain coverage: 186 / 228 aa (81.6%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-115] | Trans_reg_C[151-223]
- Domain count: 2
- Matched identifier: RROC_1313334
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; Trans_reg_C 151-223 ; Trans_reg_C 151-223
Cluster members and taxonomy
Representative gene: GCF_002940845#AWN79_RS18335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438715
AssemblyASM343871v1 · Scaffoldhaploid
Genome composition3 808 347 bp · 40,0% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 39 · RR 50CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key