1 HisKA#1
89-144 aa · 56 aa · 19.0% of protein
Raw token
HisKA:89:0.0000000000169:144:56:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB99_RS13560
Histidine kinase, Classic
Agathobacter rectalis · GCF_003438715
ClassHKTypeClassicLength295 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003438715#DXB99_RS13560Stable P2CS identifier used across views.
GenomeGCF_003438715Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length295 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage142 / 295 aa (48.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa295 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
196-281 aa · 86 aa · 29.2% of protein
Raw token
HATPase_c:196:0.00000000000000682:281:91:109- Raw architecture: HisKA:89:0.0000000000169:144:56:64#HATPase_c:196:0.00000000000000682:281:91:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003438715::NZ_QSTP01000017.1::G00018
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span48092-48982Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB99_13560RefSeq proteinWP_117719197.1
Context group ID
GCF_003438715::NZ_QSTP01000017.1::G00018Context members
DXB99_RS13560
Partner locus tags
DXB99_RS13560
Partner old locus tags
DXB99_13560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117719197.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4Y6F8Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4Y6F8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB99_RS13560Primary locus identifier stored in the genes table.
Old locus tagDXB99_13560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSTP01000017.1Sequence record reported by the local genomic context database.
Genomic interval48 092-48 982 nt891 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span48 092-48 982 ntGCF_003438715::NZ_QSTP01000017.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438715::NZ_QSTP01000017.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSTP01000017.1All displayed genes belong to this local TCS context.
Neighborhood span48 092-48 982 nt891 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
48 092 nt48 982 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB99_RS13560GCF_003438715#DXB99_RS13560
HKClassicCurrent focus
48 092-48 982 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438715#DXB99_RS13560The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2892320
Simplified PFAM architecture for HKOC_2892320
PFAM domain coverage: 144 / 295 aa (48.8%)
1 aa295 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[87-144] | HATPase_c[196-281]
- Domain count: 2
- Matched identifier: HKOC_2892320
- Positioned domains: HisKA 87-144 ; HATPase_c 196-281
Cluster members and taxonomy
Representative gene: GCF_003438715#DXB99_RS13560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438715
AssemblyASM343871v1 · Scaffoldhaploid
Genome composition3 808 347 bp · 40,0% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 39 · RR 50CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key