1 HisKA#1
79-147 aa · 69 aa · 21.9% of protein
Raw token
HisKA:79:0.0000000000045:147:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB99_RS09580
Histidine kinase, Classic
Agathobacter rectalis · GCF_003438715
ClassHKTypeClassicLength315 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003438715#DXB99_RS09580Stable P2CS identifier used across views.
GenomeGCF_003438715Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length315 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 315 aa (60.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa315 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
194-313 aa · 120 aa · 38.1% of protein
Raw token
HATPase_c:194:0.00000000000000964:313:124:109- Raw architecture: HisKA:79:0.0000000000045:147:69:64#HATPase_c:194:0.00000000000000964:313:124:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003438715::NZ_QSTP01000009.1::G00052
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span108473-109420Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB99_09580RefSeq proteinWP_117718888.1
Context group ID
GCF_003438715::NZ_QSTP01000009.1::G00052Context members
DXB99_RS09580
Partner locus tags
DXB99_RS09580
Partner old locus tags
DXB99_09580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117718888.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4Y9B3Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4Y9B3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB99_RS09580Primary locus identifier stored in the genes table.
Old locus tagDXB99_09580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSTP01000009.1Sequence record reported by the local genomic context database.
Genomic interval108 473-109 420 nt948 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span108 473-109 420 ntGCF_003438715::NZ_QSTP01000009.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438715::NZ_QSTP01000009.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSTP01000009.1All displayed genes belong to this local TCS context.
Neighborhood span108 473-109 420 nt948 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
108 473 nt109 420 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB99_RS09580GCF_003438715#DXB99_RS09580
HKClassicCurrent focus
108 473-109 420 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438715#DXB99_RS09580The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2873505
Simplified PFAM architecture for HKOC_2873505
PFAM domain coverage: 173 / 315 aa (54.9%)
1 aa315 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[89-146] | HATPase_c[196-310]
- Domain count: 2
- Matched identifier: HKOC_2873505
- Positioned domains: HisKA 89-146 ; HATPase_c 196-310
Cluster members and taxonomy
Representative gene: GCF_003438715#DXB99_RS09580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438715
AssemblyASM343871v1 · Scaffoldhaploid
Genome composition3 808 347 bp · 40,0% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 39 · RR 50CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key