1 Response_reg#1
4-118 aa · 115 aa · 21.7% of protein
Raw token
Response_reg:4:6.64e-31:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB99_RS09180
Response regulator, unclassified
Agathobacter rectalis · GCF_003438715
ClassRRTypeunclassifiedLength531 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438715#DXB99_RS09180Stable P2CS identifier used across views.
GenomeGCF_003438715Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length531 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 531 aa (36.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa531 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
434-475 aa · 42 aa · 7.9% of protein
Raw token
HTH_AraC:434:0.00000012:475:42:423 HTH_AraC#3
489-525 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:489:0.00004:525:37:42- Raw architecture: Response_reg:4:6.64e-31:118:115:111#HTH_AraC:434:0.00000012:475:42:42#HTH_AraC:489:0.00004:525:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438715::NZ_QSTP01000009.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25441-28813Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB99_09180RefSeq proteinWP_117718851.1
Context group ID
GCF_003438715::NZ_QSTP01000009.1::G00051Context members
DXB99_RS09180DXB99_RS09185
Partner locus tags
DXB99_RS09180DXB99_RS09185
Partner old locus tags
DXB99_09180DXB99_09185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117718851.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4Y8L1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4Y8L1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB99_RS09180Primary locus identifier stored in the genes table.
Old locus tagDXB99_09180Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSTP01000009.1Sequence record reported by the local genomic context database.
Genomic interval25 441-27 036 nt1 596 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span25 441-28 813 ntGCF_003438715::NZ_QSTP01000009.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438715::NZ_QSTP01000009.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSTP01000009.1All displayed genes belong to this local TCS context.
Neighborhood span25 441-28 813 nt3 373 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 441 nt28 813 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB99_RS09180GCF_003438715#DXB99_RS09180
RRunclassifiedCurrent focus
25 441-27 036 nt · Reverse (-)
DXB99_RS09185GCF_003438715#DXB99_RS09185
HKClassic
27 047-28 813 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438715#DXB99_RS09180The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0110017
Simplified PFAM architecture for RROC_0110017
PFAM domain coverage: 193 / 531 aa (36.3%)
1 aa531 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-117] | HTH_18[448-526]
- Domain count: 2
- Matched identifier: RROC_0110017
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; HTH_18 448-526 ; HTH_18 448-526
Cluster members and taxonomy
Representative gene: GCF_003438715#DXB99_RS09180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438715
AssemblyASM343871v1 · Scaffoldhaploid
Genome composition3 808 347 bp · 40,0% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 39 · RR 50CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key