1 Response_reg#1
4-116 aa · 113 aa · 50.9% of protein
Raw token
Response_reg:4:1.78e-32:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB99_RS08855
Response regulator OmpR family
Agathobacter rectalis · GCF_003438715
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438715#DXB99_RS08855Stable P2CS identifier used across views.
GenomeGCF_003438715Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 222 aa (84.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.3% of protein
Raw token
Trans_reg_C:148:5.7e-29:221:77:77- Raw architecture: Response_reg:4:1.78e-32:116:113:111#Trans_reg_C:148:5.7e-29:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438715::NZ_QSTP01000008.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span83301-85336Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB99_08855RefSeq proteinWP_117715057.1
Context group ID
GCF_003438715::NZ_QSTP01000008.1::G00050Context members
DXB99_RS08855DXB99_RS08860
Partner locus tags
DXB99_RS08855DXB99_RS08860
Partner old locus tags
DXB99_08855DXB99_08860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117715057.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4Y9Y3Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4Y9Y3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB99_RS08855Primary locus identifier stored in the genes table.
Old locus tagDXB99_08855Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSTP01000008.1Sequence record reported by the local genomic context database.
Genomic interval83 301-83 969 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span83 301-85 336 ntGCF_003438715::NZ_QSTP01000008.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438715::NZ_QSTP01000008.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSTP01000008.1All displayed genes belong to this local TCS context.
Neighborhood span83 301-85 336 nt2 036 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 301 nt85 336 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB99_RS08855GCF_003438715#DXB99_RS08855
RROmpRCurrent focus
83 301-83 969 nt · Forward (+)
DXB99_RS08860GCF_003438715#DXB99_RS08860
HKClassic
84 014-85 336 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438175#DXC13_RS08920Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1646820
Simplified PFAM architecture for RROC_1646820
PFAM domain coverage: 185 / 222 aa (83.3%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-116] | Trans_reg_C[149-220]
- Domain count: 2
- Matched identifier: RROC_1646820
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; Trans_reg_C 149-220 ; Trans_reg_C 149-220
Cluster members and taxonomy
Representative gene: GCF_003438175#DXC13_RS08920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438715
AssemblyASM343871v1 · Scaffoldhaploid
Genome composition3 808 347 bp · 40,0% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 39 · RR 50CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key