1 HAMP#1
50-120 aa · 71 aa · 20.5% of protein
Raw token
HAMP:50:0.0000000000015:120:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB99_RS07085
Histidine kinase, Classic
Agathobacter rectalis · GCF_003438715
ClassHKTypeClassicLength346 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438715#DXB99_RS07085Stable P2CS identifier used across views.
GenomeGCF_003438715Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length346 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 346 aa (70.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa346 aa
Domain-by-domain annotation3 items
2 HisKA#2
127-189 aa · 63 aa · 18.2% of protein
Raw token
HisKA:127:0.00000000000000323:189:63:643 HATPase_c#3
233-343 aa · 111 aa · 32.1% of protein
Raw token
HATPase_c:233:2.77e-28:343:111:109- Raw architecture: HAMP:50:0.0000000000015:120:71:69#HisKA:127:0.00000000000000323:189:63:64#HATPase_c:233:2.77e-28:343:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438715::NZ_QSTP01000006.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11740-13451Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB99_07085RefSeq proteinWP_117718720.1
Context group ID
GCF_003438715::NZ_QSTP01000006.1::G00042Context members
DXB99_RS07080DXB99_RS07085
Partner locus tags
DXB99_RS07080DXB99_RS07085
Partner old locus tags
DXB99_07080DXB99_07085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117718720.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4YBB5Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4YBB5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB99_RS07085Primary locus identifier stored in the genes table.
Old locus tagDXB99_07085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSTP01000006.1Sequence record reported by the local genomic context database.
Genomic interval12 411-13 451 nt1 041 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span11 740-13 451 ntGCF_003438715::NZ_QSTP01000006.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438715::NZ_QSTP01000006.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSTP01000006.1All displayed genes belong to this local TCS context.
Neighborhood span11 740-13 451 nt1 712 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 740 nt13 451 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB99_RS07080GCF_003438715#DXB99_RS07080
RROmpR
11 740-12 411 nt · Forward (+)
DXB99_RS07085GCF_003438715#DXB99_RS07085
HKClassicCurrent focus
12 411-13 451 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438715#DXB99_RS07085The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2816307
Simplified PFAM architecture for HKOC_2816307
PFAM domain coverage: 224 / 346 aa (64.7%)
1 aa346 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[68-120] | HisKA[126-188] | HATPase_c[235-342]
- Domain count: 3
- Matched identifier: HKOC_2816307
- Positioned domains: HAMP 68-120 ; HisKA 126-188 ; HATPase_c 235-342
Cluster members and taxonomy
Representative gene: GCF_003438715#DXB99_RS07085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438715
AssemblyASM343871v1 · Scaffoldhaploid
Genome composition3 808 347 bp · 40,0% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 39 · RR 50CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key