1 Response_reg#1
4-114 aa · 111 aa · 94.1% of protein
Raw token
Response_reg:4:3.56e-29:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB99_RS02290
Response regulator, CheY family
Agathobacter rectalis · GCF_003438715
ClassRRTypeCheYLength118 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003438715#DXB99_RS02290Stable P2CS identifier used across views.
GenomeGCF_003438715Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length118 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 118 aa (94.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa118 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:3.56e-29:114:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003438715::NZ_QSTP01000001.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span441005-441361Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB99_02290RefSeq proteinWP_117718133.1
Context group ID
GCF_003438715::NZ_QSTP01000001.1::G00003Context members
DXB99_RS02290
Partner locus tags
DXB99_RS02290
Partner old locus tags
DXB99_02290
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117718133.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4YKW8Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4YKW8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB99_RS02290Primary locus identifier stored in the genes table.
Old locus tagDXB99_02290Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSTP01000001.1Sequence record reported by the local genomic context database.
Genomic interval441 005-441 361 nt357 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span441 005-441 361 ntGCF_003438715::NZ_QSTP01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438715::NZ_QSTP01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSTP01000001.1All displayed genes belong to this local TCS context.
Neighborhood span441 005-441 361 nt357 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
441 005 nt441 361 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB99_RS02290GCF_003438715#DXB99_RS02290
RRCheYCurrent focus
441 005-441 361 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438715#DXB99_RS02290The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2457263
Simplified PFAM architecture for RROC_2457263
PFAM domain coverage: 111 / 118 aa (94.1%)
1 aa118 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-114]
- Domain count: 1
- Matched identifier: RROC_2457263
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114
Cluster members and taxonomy
Representative gene: GCF_003438715#DXB99_RS02290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438715
AssemblyASM343871v1 · Scaffoldhaploid
Genome composition3 808 347 bp · 40,0% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 39 · RR 50CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key