1 Response_reg#1
5-113 aa · 109 aa · 30.9% of protein
Raw token
Response_reg:5:7.41e-29:113:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB99_RS01245
Response regulator, CheB family
Agathobacter rectalis · GCF_003438715
ClassRRTypeCheBLength353 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438715#DXB99_RS01245Stable P2CS identifier used across views.
GenomeGCF_003438715Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regCheB_methylest
Protein length353 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage290 / 353 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 CheB_methylestSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa353 aa
Domain-by-domain annotation2 items
2 CheB_methylest#2
166-346 aa · 181 aa · 51.3% of protein
Raw token
CheB_methylest:166:7.15e-77:346:181:177- Raw architecture: Response_reg:5:7.41e-29:113:109:111#CheB_methylest:166:7.15e-77:346:181:177
- Domain description: 1 Response_reg,1 CheB_methylest
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438715::NZ_QSTP01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span239610-242793Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB99_01245RefSeq proteinWP_117714148.1
Context group ID
GCF_003438715::NZ_QSTP01000001.1::G00002Context members
DXB99_RS01240DXB99_RS01245
Partner locus tags
DXB99_RS01240DXB99_RS01245
Partner old locus tags
DXB99_01240DXB99_01245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117714148.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4YKB7Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4YKB7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB99_RS01245Primary locus identifier stored in the genes table.
Old locus tagDXB99_01245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSTP01000001.1Sequence record reported by the local genomic context database.
Genomic interval241 732-242 793 nt1 062 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span239 610-242 793 ntGCF_003438715::NZ_QSTP01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438715::NZ_QSTP01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSTP01000001.1All displayed genes belong to this local TCS context.
Neighborhood span239 610-242 793 nt3 184 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
239 610 nt242 793 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB99_RS01240GCF_003438715#DXB99_RS01240
HKCheA
239 610-241 730 nt · Reverse (-)
DXB99_RS01245GCF_003438715#DXB99_RS01245
RRCheBCurrent focus
241 732-242 793 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438175#DXC13_RS00335Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + CheB_methylest2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0473654
Simplified PFAM architecture for RROC_0473654
PFAM domain coverage: 287 / 353 aa (81.3%)
1 aa353 aa
Response_regCheB_methylest
- Simplified architecture: Response_reg + CheB_methylest
- Raw architecture: Response_reg[5-110] | CheB_methylest[166-346]
- Domain count: 2
- Matched identifier: RROC_0473654
- Positioned domains: Response_reg 5-110 ; Response_reg 5-110 ; CheB_methylest 166-346 ; CheB_methylest 166-346
Cluster members and taxonomy
Representative gene: GCF_003438175#DXC13_RS00335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438715
AssemblyASM343871v1 · Scaffoldhaploid
Genome composition3 808 347 bp · 40,0% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 39 · RR 50CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key