1 Response_reg#1
4-114 aa · 111 aa · 49.6% of protein
Raw token
Response_reg:4:4.26e-29:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC54_RS09355
Response regulator OmpR family
Bifidobacterium longum · GCF_003438485
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438485#DXC54_RS09355Stable P2CS identifier used across views.
GenomeGCF_003438485Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 224 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-223 aa · 71 aa · 31.7% of protein
Raw token
Trans_reg_C:153:2.75e-16:223:75:77- Raw architecture: Response_reg:4:4.26e-29:114:111:111#Trans_reg_C:153:2.75e-16:223:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438485::NZ_QSSF01000008.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span120810-122977Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC54_09350RefSeq proteinWP_227484923.1
Context group ID
GCF_003438485::NZ_QSSF01000008.1::G00011Context members
DXC54_RS09355DXC54_RS09360
Partner locus tags
DXC54_RS09355DXC54_RS09360
Partner old locus tags
DXC54_09350DXC54_09355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_227484923.1Primary protein accession used for annex mappings.
UniProt accessionA0A087BAI2Primary UniProt accession resolved in the annex database.
UniProt IDA0A087BAI2_BIFLNDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC54_RS09355Primary locus identifier stored in the genes table.
Old locus tagDXC54_09350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSSF01000008.1Sequence record reported by the local genomic context database.
Genomic interval120 810-121 484 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span120 810-122 977 ntGCF_003438485::NZ_QSSF01000008.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438485::NZ_QSSF01000008.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSSF01000008.1All displayed genes belong to this local TCS context.
Neighborhood span120 810-122 977 nt2 168 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
120 810 nt122 977 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC54_RS09355GCF_003438485#DXC54_RS09355
RROmpRCurrent focus
120 810-121 484 nt · Forward (+)
DXC54_RS09360GCF_003438485#DXC54_RS09360
HKClassic
121 481-122 977 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033657985#RS908_RS06105Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1037058
Simplified PFAM architecture for RROC_1037058
PFAM domain coverage: 182 / 235 aa (77.4%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[15-125] | Trans_reg_C[164-234]
- Domain count: 2
- Matched identifier: RROC_1037058
- Positioned domains: Response_reg 15-125 ; Trans_reg_C 164-234
Cluster members and taxonomy
Representative gene: GCF_033657985#RS908_RS06105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003438485
AssemblyASM343848v1 · Scaffoldhaploid
Genome composition2 527 625 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 21 · HK 11 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key