1 HisKA_3#1
244-302 aa · 59 aa · 7.4% of protein
Raw token
HisKA_3:244:0.0000000000000144:302:59:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB68_RS09535
Histidine kinase, Classic
Bifidobacterium longum · GCF_003438385
ClassHKTypeClassicLength797 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438385#DXB68_RS09535Stable P2CS identifier used across views.
GenomeGCF_003438385Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length797 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage224 / 797 aa (28.1%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa797 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
345-438 aa · 94 aa · 11.8% of protein
Raw token
HATPase_c:345:0.000000000000249:438:110:1093 HisKA_3#3
694-764 aa · 71 aa · 8.9% of protein
Raw token
HisKA_3:694:0.0000593:764:71:68- Raw architecture: HisKA_3:244:0.0000000000000144:302:59:68#HATPase_c:345:0.000000000000249:438:110:109#HisKA_3:694:0.0000593:764:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438385::NZ_QSUI01000013.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14722-18059Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB68_09530RefSeq proteinWP_117701464.1
Context group ID
GCF_003438385::NZ_QSUI01000013.1::G00002Context members
DXB68_RS09535DXB68_RS09540
Partner locus tags
DXB68_RS09535DXB68_RS09540
Partner old locus tags
DXB68_09530DXB68_09535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117701464.1Primary protein accession used for annex mappings.
UniProt accessionA0AB37LEE2Primary UniProt accession resolved in the annex database.
UniProt IDA0AB37LEE2_BIFLNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB68_RS09535Primary locus identifier stored in the genes table.
Old locus tagDXB68_09530Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSUI01000013.1Sequence record reported by the local genomic context database.
Genomic interval14 722-17 115 nt2 394 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 722-18 059 ntGCF_003438385::NZ_QSUI01000013.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438385::NZ_QSUI01000013.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSUI01000013.1All displayed genes belong to this local TCS context.
Neighborhood span14 722-18 059 nt3 338 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 722 nt18 059 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB68_RS09535GCF_003438385#DXB68_RS09535
HKClassicCurrent focus
14 722-17 115 nt · Forward (+)
DXB68_RS09540GCF_003438385#DXB68_RS09540
RRNarL
17 199-18 059 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003475055#DWZ71_RS04780Use this link to inspect the representative gene detail.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0556512
Simplified PFAM architecture for HKOC_0556512
PFAM domain coverage: 412 / 800 aa (51.5%)
1 aa800 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[16-141] | HisKA_3[247-308] | HATPase_c[348-440] | DUF7134[488-618]
- Domain count: 4
- Matched identifier: HKOC_0556512
- Positioned domains: DUF7134 16-141 ; HisKA_3 247-308 ; HATPase_c 348-440 ; DUF7134 488-618
Cluster members and taxonomy
Representative gene: GCF_003475055#DWZ71_RS04780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003438385
AssemblyASM343838v1 · Scaffoldhaploid
Genome composition2 436 854 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key